5CZJ | pdb_00005czj

Crystal structure of HypD, a 1-pyrroline-4-hydroxy-2-carboxylate deaminase from Sinorhizobium meliloti

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2 FamilyClass I aldolase 8100359 4003216 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyAldolase 8100360 3000445 SCOP2 (2022-06-29)
ASCOP2B SuperfamilyAldolase 8100360 3000445 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BIBR_2e5czjB1 A: a/b three-layered sandwichesX: HhH/H2THH: Head and neck region of the ectodomain of paramyxoviruses fusion glycoproteinT: Head and neck region of the ectodomain of paramyxoviruses fusion glycoproteinF: IBR_2ECOD (v294.1)
AIBR_2e5czjA1 A: a/b three-layered sandwichesX: HhH/H2THH: Head and neck region of the ectodomain of paramyxoviruses fusion glycoproteinT: Head and neck region of the ectodomain of paramyxoviruses fusion glycoproteinF: IBR_2ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
A3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00701Dihydrodipicolinate synthetase family (DHDPS)Dihydrodipicolinate synthetase familyThis family has a TIM barrel structure. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Dihydrodipicolinate synthase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR013785Aldolase-type TIM barrelHomologous Superfamily
A, B
IPR002220DapA-likeFamily