5CX7 | pdb_00005cx7

Crystal Structure of PduOC:Heme Complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
E	SCOP2 Family	GlcG-like	8096411	4003947	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	GlcG-like	8096412	3001903	SCOP2 (2022-06-29)
G	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GlcG-like	8096412	3001903	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Haem_degrading	e5cx7A1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
B	Haem_degrading	e5cx7B1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
C	Haem_degrading	e5cx7C1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
E	Haem_degrading	e5cx7E1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
G	Haem_degrading	e5cx7G1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
I	Haem_degrading	e5cx7I1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
J	Haem_degrading	e5cx7J1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
K	Haem_degrading	e5cx7K1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
L	Haem_degrading	e5cx7L1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
N	Haem_degrading	e5cx7N1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
P	Haem_degrading	e5cx7P1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
O	Haem_degrading	e5cx7O1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
M	Haem_degrading	e5cx7M1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
H	Haem_degrading	e5cx7H1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
F	Haem_degrading	e5cx7F1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)
D	Haem_degrading	e5cx7D1	A: a+b three layers	X: Profilin-like	H: GlcG-like (From Topology)	T: GlcG-like	F: Haem_degrading	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
B	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
C	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
E	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
G	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
I	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
J	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
K	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
L	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
N	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
P	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
O	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
M	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
H	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
F	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)
D	3.30.450.150	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Haem-degrading domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF03928	Haem degrading protein HbpS-like (HbpS-like)	Haem degrading protein HbpS-like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	ATP:cob(I)alamin adenosyltransferase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding corrinoid adenosyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity cation binding metal ion binding	cobalamin metabolic process cobalamin biosynthetic process water-soluble vitamin biosynthetic process tetrapyrrole metabolic process small molecule biosynthetic process vitamin biosynthetic process vitamin metabolic process tetrapyrrole biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process diol catabolic process polyol metabolic process cobalamin metabolic process cobalamin biosynthetic process water-soluble vitamin biosynthetic process tetrapyrrole metabolic process small molecule biosynthetic process vitamin biosynthetic process vitamin metabolic process tetrapyrrole biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process diol catabolic process polyol metabolic process alcohol catabolic process catabolic process polyol catabolic process alcohol metabolic process glycol metabolic process diol metabolic process 1,2-propanediol catabolic process glycol catabolic process small molecule catabolic process	intracellular organelle propanediol degradation polyhedral organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR029499	Corrinoid adenosyltransferase, PduO-type	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR009221	Corrinoid adenosyltransferase PduO	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR036451	Cobalamin adenosyltransferase-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR038084	Corrinoid adenosyltransferase PduO/GlcC-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR005624	Corrinoid adenosyltransferase PduO/GlcC-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR016030	Cobalamin adenosyltransferase-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.