5CVC | pdb_00005cvc

Structure of maize serine racemase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5cvcb1	Alpha and beta proteins (a/b)	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	automated matches	automated matches	Maize (Zea mays ) [TaxId: 4577 ],	SCOPe (2.08)
B	d5cvcb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Maize (Zea mays ) [TaxId: 4577 ],	SCOPe (2.08)
C	d5cvcc1	Alpha and beta proteins (a/b)	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	automated matches	automated matches	Maize (Zea mays ) [TaxId: 4577 ],	SCOPe (2.08)
C	d5cvcc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Maize (Zea mays ) [TaxId: 4577 ],	SCOPe (2.08)
A	d5cvca1	Alpha and beta proteins (a/b)	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	automated matches	automated matches	Maize (Zea mays ) [TaxId: 4577 ],	SCOPe (2.08)
A	d5cvca2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Maize (Zea mays ) [TaxId: 4577 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Tryptophan synthase beta subunit-like PLP-dependent enzymes	8066145	3001427	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Tryptophan synthase beta subunit-like PLP-dependent enzymes	8066145	3001427	SCOP2B (2022-06-29)
A	SCOP2 Family	Tryptophan synthase beta subunit-like PLP-dependent enzymes	8066144	4000798	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Tryptophan synthase beta subunit-like PLP-dependent enzymes	8066145	3001427	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e5cvcB1	A: jelly-roll	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T:	F:	ECOD (20:10:01)
C		e5cvcC1	A: jelly-roll	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T:	F:	ECOD (20:10:01)
A		e5cvcA1	A: jelly-roll	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.1100	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C	3.40.50.1100	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	3.40.50.1100	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Serine racemase	L-serine ammonia-lyase activity lyase activity ammonia-lyase activity catalytic activity carbon-nitrogen lyase activity isomerase activity serine racemase activity racemase and epimerase activity racemase and epimerase activity, acting on amino acids and derivatives amino-acid racemase activity cation binding ion binding binding metal ion binding L-serine ammonia-lyase activity lyase activity ammonia-lyase activity catalytic activity carbon-nitrogen lyase activity isomerase activity serine racemase activity racemase and epimerase activity racemase and epimerase activity, acting on amino acids and derivatives amino-acid racemase activity cation binding ion binding binding metal ion binding small molecule binding D-serine ammonia-lyase activity	oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process D-serine metabolic process alpha-amino acid metabolic process non-proteinogenic amino acid metabolic process D-amino acid metabolic process metabolic process cellular process small molecule metabolic process L-serine metabolic process L-amino acid metabolic process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process D-serine metabolic process alpha-amino acid metabolic process non-proteinogenic amino acid metabolic process D-amino acid metabolic process metabolic process cellular process small molecule metabolic process L-serine metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR036052	Tryptophan synthase beta chain-like, PALP domain superfamily	Homologous Superfamily
A, B, C	IPR001926	Tryptophan synthase beta chain-like, PALP domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.