5CTQ | pdb_00005ctq

Crystal structure of human SART3/TIP110 half-a TPR (HAT) domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	ThiF	e5ctqD1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: ThiF	ECOD (develop294)
C	ThiF	e5ctqC1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: ThiF	ECOD (develop294)
B	ThiF	e5ctqB1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: ThiF	ECOD (develop294)
A	SGBP_B_XBD	e5ctqA1	A: alpha bundles	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: SGBP_B_XBD	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF23241	PRP39 C-terminal HAT repeat (HAT_PRP39_C)	PRP39 C-terminal HAT repeat	-	Repeat
A, B, C, D	PF23240	PRP39 N-terminal HAT repeat (HAT_PRP39_N)	PRP39 N-terminal HAT repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Squamous cell carcinoma antigen recognized by T-cells 3	protein binding binding histone binding RNA binding U6 snRNA binding snRNA binding nucleic acid binding U4 snRNA binding protein-macromolecule adaptor activity molecular adaptor activity ubiquitin-specific protease binding enzyme binding protease binding U6atac snRNA binding	developmental process stem cell proliferation cell population proliferation cellular developmental process hemopoiesis cell differentiation anatomical structure development hematopoietic stem cell proliferation cell development cellular process regulation of biological process regulation of cellular process biological regulation RNA metabolic process developmental process stem cell proliferation cell population proliferation cellular developmental process hemopoiesis cell differentiation anatomical structure development hematopoietic stem cell proliferation cell development cellular process regulation of biological process regulation of cellular process biological regulation RNA metabolic process primary metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of RNA metabolic process metabolic process regulation of nucleobase-containing compound metabolic process macromolecule metabolic process regulation of metabolic process multicellular organismal process multicellular organismal-level homeostasis homeostatic process homeostasis of number of cells regulation of biosynthetic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process ribonucleoprotein complex biogenesis mRNA processing spliceosomal tri-snRNP complex assembly protein-RNA complex assembly cellular component organization cellular component biogenesis RNA biosynthetic process nucleic acid biosynthetic process protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis RNA processing RNA splicing protein-containing complex organization spliceosomal snRNP assembly nucleobase-containing compound biosynthetic process mRNA metabolic process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome RNA splicing, via transesterification reactions with bulged adenosine as nucleophile protein-DNA complex assembly protein-DNA complex organization chromatin organization chromatin remodeling nucleosome assembly nucleosome organization anatomical structure morphogenesis cell morphogenesis transcription elongation by RNA polymerase II transcription elongation-coupled chromatin remodeling DNA-templated transcription DNA-templated transcription elongation transcription by RNA polymerase II	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen cytoplasm Cajal body ASAP complex protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B, C, D	IPR008669	LSM-interacting domain	Domain
A, B, C, D	IPR034218	SART3, RNA recognition motif 2	Domain
A, B, C, D	IPR034217	SART3, RNA recognition motif 1	Domain
A, B, C, D	IPR000504	RNA recognition motif domain	Domain
A, B, C, D	IPR003107	HAT (Half-A-TPR) repeat	Repeat
A, B, C, D	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A, B, C, D	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR059164	PRP39, C-terminal HAT repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q15020	acute myeloid leukemia dermatomyositis large cell medulloblastoma malignant glioma osteosarcoma tuberculosis adrenal cortex carcinoma diabetes mellitus lung adenocarcinoma malignant mesothelioma ovarian cancer astrocytic tumor juvenile dermatomyositis lung cancer medulloblastoma acute myeloid leukemia dermatomyositis large cell medulloblastoma malignant glioma osteosarcoma tuberculosis adrenal cortex carcinoma diabetes mellitus lung adenocarcinoma malignant mesothelioma ovarian cancer astrocytic tumor juvenile dermatomyositis lung cancer medulloblastoma primary cutaneous T-cell non-Hodgkin lymphoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.