5CHH | pdb_00005chh

Crystal structure of transcriptional regulator CdpR from Pseudomonas aeruginosa

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PA2588-like	8047722	4005784	SCOP2 (2022-06-29)
A	SCOP2 Family	AraC type transcriptional activator	8104124	4000332	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ligand-binding domain in the NO signalling and Golgi transport	8104123	3001668	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Homeodomain-like	8104126	3000001	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Homeodomain-like	8104125	3000001	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HTH_18	e5chhA1	A: a/b three-layered sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: HTH_18	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF12625	Arabinose-binding domain of AraC transcription regulator, N-term (Arabinose_bd)	Arabinose-binding domain of AraC transcription regulator, N-term	AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, Pfam:PF00165, and this dimerisation domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively reg ...	AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, Pfam:PF00165, and this dimerisation domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	Domain
A	PF12833	Helix-turn-helix domain (HTH_18)	Helix-turn-helix domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	AraC family transcriptional regulator	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A	IPR018060	AraC-like, DNA binding HTH domain	Domain
A	IPR032687	HTH-type transcriptional regulator AraC-type, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.