5CFF | pdb_00005cff

Crystal structure of Miranda/Staufen dsRBD5 complex

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HP53_tetramere5cffH1 A: a/b three-layered sandwichesX: beta-clipH: p53 tetramerization domainT: p53 tetramerization domainF: P53_tetramerECOD (v294.1)
GP53_tetramere5cffG1 A: a/b three-layered sandwichesX: beta-clipH: p53 tetramerization domainT: p53 tetramerization domainF: P53_tetramerECOD (v294.1)
FKRIT1_FRMD8_FERM_Ce5cffF1 A: a/b three-layered sandwichesX: C-terminal additional helical subdomain in reovirus polymerase lambda3H: C-terminal additional helical subdomain in reovirus polymerase lambda3T: C-terminal additional helical subdomain in reovirus polymerase lambda3F: KRIT1_FRMD8_FERM_CECOD (v294.1)
EP53_tetramere5cffE1 A: a/b three-layered sandwichesX: beta-clipH: p53 tetramerization domainT: p53 tetramerization domainF: P53_tetramerECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H3.30.160.20 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (4.3.0)
G3.30.160.20 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (4.3.0)
F3.30.160.20 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (4.3.0)
E3.30.160.20 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E, F, G, H
PF16482Staufen C-terminal domain (Staufen_C)Staufen C-terminal domainThis is the C-terminal domain of Staufen proteins. It consists of an N-terminal Staufen-swapping motif (SSM) comprising two alpha helices, connected by a linker region to a dsRNA-binding-like domain ('RBD'). The 'RBD' has the fold of a functional dsR ...This is the C-terminal domain of Staufen proteins. It consists of an N-terminal Staufen-swapping motif (SSM) comprising two alpha helices, connected by a linker region to a dsRNA-binding-like domain ('RBD'). The 'RBD' has the fold of a functional dsRNA-binding domain, but lacks the residues required to bind RNA. This domain is responsible for dimerisation, the SSM from one molecule interacts with the 'RBD' of another [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E, F, G, H
Staufen
A, B, C, D
Miranda

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E, F, G, H
IPR051740Double-stranded RNA-binding domain-containing proteinFamily
E, F, G, H
IPR032478Staufen, C-terminalDomain
E, F, G, H
IPR014720Double-stranded RNA-binding domainDomain