Crystal structure of Thermus thermophilus CarH bound to adenosylcobalamin and a 26-bp DNA segment
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H | TetR_N | e5c8eH1 | A: alpha bundles | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: TetR_N | ECOD (develop294) |
| G | TetR_N | e5c8eG1 | A: alpha bundles | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: TetR_N | ECOD (develop294) |
| F | TetR_N | e5c8eF1 | A: alpha bundles | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: TetR_N | ECOD (develop294) |
| E | TetR_N | e5c8eE1 | A: alpha bundles | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: TetR_N | ECOD (develop294) |
| D | TetR_N | e5c8eD1 | A: alpha bundles | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: TetR_N | ECOD (develop294) |
| C | TetR_N | e5c8eC1 | A: alpha bundles | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: TetR_N | ECOD (develop294) |
| B | TetR_N | e5c8eB1 | A: alpha bundles | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: TetR_N | ECOD (develop294) |
| A | TetR_N | e5c8eA1 | A: alpha bundles | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: TetR_N | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| G | 1.10.1660.10 | Mainly Alpha | Orthogonal Bundle | Multidrug-efflux Transporter Regulator | Chain: A | CATH (4.3.0) |
| G | 1.10.1240.10 | Mainly Alpha | Orthogonal Bundle | Methyltransferase, Methionine Synthase (B12-binding Domains) | Chain A, domain 1 | CATH (4.3.0) |
| G | 3.40.50.280 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Cobalamin-binding domain | CATH (4.3.0) |
| C | 3.40.50.280 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Cobalamin-binding domain | CATH (utative) |
| B | 1.10.1660.10 | Mainly Alpha | Orthogonal Bundle | Multidrug-efflux Transporter Regulator | Chain: A | CATH (4.3.0) |
| B | 1.10.1240.10 | Mainly Alpha | Orthogonal Bundle | Methyltransferase, Methionine Synthase (B12-binding Domains) | Chain A, domain 1 | CATH (4.3.0) |
| B | 3.40.50.280 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Cobalamin-binding domain | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| 26-mer DNA segment containing the CarH operator sequence (sense strand) | - | - | - | |
| 26-mer DNA segment containing the CarH operator sequence (antisense strand) | - | - | - | |
| Light-dependent transcriptional regulator CarH | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR003759 | Cobalamin (vitamin B12)-binding module, cap domain | Domain | |
| IPR009061 | Putative DNA-binding domain superfamily | Homologous Superfamily | |
| IPR036724 | Cobalamin-binding domain superfamily | Homologous Superfamily | |
| IPR047057 | MerR transcriptional regulator | Family | |
| IPR006158 | Cobalamin (vitamin B12)-binding domain | Domain | |
| IPR036594 | Methionine synthase domain | Homologous Superfamily | |
| IPR000551 | MerR-type HTH domain | Domain |














