5C5Y | pdb_00005c5y

Crystal structure of deoxyribose-phosphate aldolase from Colwellia psychrerythraea (hexagonal form)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5c5yd_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I aldolase	automated matches	(Colwellia psychrerythraea 34H ) [TaxId: 167879 ],	SCOPe (2.08)
C	d5c5yc_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I aldolase	automated matches	(Colwellia psychrerythraea 34H ) [TaxId: 167879 ],	SCOPe (2.08)
B	d5c5yb_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I aldolase	automated matches	(Colwellia psychrerythraea 34H ) [TaxId: 167879 ],	SCOPe (2.08)
A	d5c5ya_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I aldolase	automated matches	(Colwellia psychrerythraea 34H ) [TaxId: 167879 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Aldolase	8074784	3000445	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Aldolase	8074784	3000445	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Aldolase	8074784	3000445	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Aldolase	8074784	3000445	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	FtsJ	e5c5yD1	A: a/b three-layered sandwiches	X: HhH/H2TH	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	F: FtsJ	ECOD (v294.1)
C	FtsJ	e5c5yC1	A: a/b three-layered sandwiches	X: HhH/H2TH	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	F: FtsJ	ECOD (v294.1)
B	FtsJ	e5c5yB1	A: a/b three-layered sandwiches	X: HhH/H2TH	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	F: FtsJ	ECOD (v294.1)
A	FtsJ	e5c5yA1	A: a/b three-layered sandwiches	X: HhH/H2TH	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	F: FtsJ	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
C	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
B	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Deoxyribose-phosphate aldolase	deoxyribose-phosphate aldolase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity	carbohydrate metabolic process catabolic process carbohydrate catabolic process primary metabolic process metabolic process cellular process deoxyribonucleotide catabolic process deoxyribonucleotide metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR011343	Deoxyribose-phosphate aldolase	Family
A, B, C, D	IPR002915	DeoC/FbaB/LacD aldolase	Family
A, B, C, D	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.