5C05 | pdb_00005c05

Crystal Structure of Gamma-terpinene Synthase from Thymus vulgaris

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5c05b1	All alpha proteins	alpha/alpha toroid	Terpenoid cyclases/Protein prenyltransferases	automated matches	automated matches	Thyme (Thymus vulgaris ) [TaxId: 49992 ],	SCOPe (2.08)
B	d5c05b2	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	Thyme (Thymus vulgaris ) [TaxId: 49992 ],	SCOPe (2.08)
A	d5c05a1	All alpha proteins	alpha/alpha toroid	Terpenoid cyclases/Protein prenyltransferases	automated matches	automated matches	Thyme (Thymus vulgaris ) [TaxId: 49992 ],	SCOPe (2.08)
A	d5c05a2	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	Thyme (Thymus vulgaris ) [TaxId: 49992 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Terpene_synth_C	e5c05B1	A: alpha bundles	X: Terpenoid synthases (From Topology)	H: Terpenoid synthases (From Topology)	T: Terpenoid synthases	F: Terpene_synth_C	ECOD (1.6)
B	Terpene_synth	e5c05B2	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Terpene_synth	ECOD (1.6)
A	Terpene_synth_C	e5c05A1	A: alpha bundles	X: Terpenoid synthases (From Topology)	H: Terpenoid synthases (From Topology)	T: Terpenoid synthases	F: Terpene_synth_C	ECOD (1.6)
A	Terpene_synth	e5c05A2	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Terpene_synth	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.50.10.130	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase	Terpene synthase, N-terminal domain	CATH (4.3.0)
B	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)
A	1.50.10.130	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase	Terpene synthase, N-terminal domain	CATH (4.3.0)
A	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative gamma-terpinene synthase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding identical protein binding protein binding protein homodimerization activity protein dimerization activity carbon-oxygen lyase activity, acting on phosphates gamma-terpinene synthase activity lyase activity catalytic activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding identical protein binding protein binding protein homodimerization activity protein dimerization activity carbon-oxygen lyase activity, acting on phosphates gamma-terpinene synthase activity lyase activity catalytic activity carbon-oxygen lyase activity terpene synthase activity	diterpenoid metabolic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process diterpenoid biosynthetic process biosynthetic process metabolic process cellular process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process response to lipid response to stimulus diterpenoid metabolic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process diterpenoid biosynthetic process biosynthetic process metabolic process cellular process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process response to lipid response to stimulus response to jasmonic acid response to hormone response to fatty acid response to chemical response to endogenous stimulus response to oxygen-containing compound response to light stimulus response to UV-C response to radiation response to abiotic stimulus response to UV response to salicylic acid	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR005630	Terpene synthase, metal-binding domain	Domain
A, B	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
A, B	IPR036965	Terpene synthase, N-terminal domain superfamily	Homologous Superfamily
A, B	IPR034741	Terpene cyclase-like 1, C-terminal domain	Domain
A, B	IPR044814	Terpene cyclases, class 1, plant	Family
A, B	IPR001906	Terpene synthase, N-terminal domain	Domain
A, B	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
A, B	IPR050148	Terpene synthase-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.