5BYV | pdb_00005byv

Crystal structure of MSM-13, a putative T1-like thiolase from Mycobacterium smegmatis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5byvd1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
G	d5byvg1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
K [auth L]	d5byvl1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
L [auth M]	d5byvm1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
J [auth K]	d5byvk1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
I [auth J]	d5byvj1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
H	d5byvh1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
F	d5byvf1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
E	d5byve1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
C	d5byvc1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
B	d5byvb1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
A	d5byva1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	TFIIE_beta	e5byvD1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
G	TFIIE_beta	e5byvG1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
K [auth L]	TFIIE_beta	e5byvL1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
L [auth M]	TFIIE_beta	e5byvM1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
J [auth K]	TFIIE_beta	e5byvK1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
I [auth J]	TFIIE_beta	e5byvJ1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
H	TFIIE_beta	e5byvH1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
F	TFIIE_beta	e5byvF1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
E	TFIIE_beta	e5byvE1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
C	TFIIE_beta	e5byvC1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
B	TFIIE_beta	e5byvB1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
A	TFIIE_beta	e5byvA1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
G	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
K [auth L]	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
L [auth M]	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
J [auth K]	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
I [auth J]	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
H	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
F	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
E	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
C	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
B	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
A	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth K], K [auth L], L [auth M]	PF02803	Thiolase, C-terminal domain (Thiolase_C)	Thiolase, C-terminal domain	Thiolase is reported to be structurally related to beta-ketoacyl synthase (Pfam:PF00109), and also chalcone synthase.	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth K], K [auth L], L [auth M]	PF00108	Thiolase, N-terminal domain (Thiolase_N)	Thiolase, N-terminal domain	Thiolase is reported to be structurally related to beta-ketoacyl synthase (Pfam:PF00109), and also chalcone synthase.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth K], K [auth L], L [auth M]	Beta-ketothiolase	acetyl-CoA C-acetyltransferase activity acetyltransferase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity acetyl-CoA C-acyltransferase activity C-acyltransferase activity catalytic activity C-acetyltransferase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth K], K [auth L], L [auth M]	IPR016039	Thiolase-like	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth K], K [auth L], L [auth M]	IPR020617	Thiolase, C-terminal	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth K], K [auth L], L [auth M]	IPR020616	Thiolase, N-terminal	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I [auth J], J [auth K], K [auth L], L [auth M]	IPR002155	Thiolase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.