5BT8 | pdb_00005bt8

X-ray Crystal Structure of phosphoglycerate kinase from Acinetobacter baumannii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d5bt8f1	Alpha and beta proteins (a/b)	Phosphoglycerate kinase	Phosphoglycerate kinase	automated matches	automated matches	(Acinetobacter baumannii AB5075 ) [TaxId: 1116234 ],	SCOPe (2.08)
F	d5bt8f2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Acinetobacter baumannii AB5075 ) [TaxId: 1116234 ],	SCOPe (2.08)
E	d5bt8e_	Alpha and beta proteins (a/b)	Phosphoglycerate kinase	Phosphoglycerate kinase	automated matches	automated matches	(Acinetobacter baumannii AB5075 ) [TaxId: 1116234 ],	SCOPe (2.08)
D	d5bt8d_	Alpha and beta proteins (a/b)	Phosphoglycerate kinase	Phosphoglycerate kinase	automated matches	automated matches	(Acinetobacter baumannii AB5075 ) [TaxId: 1116234 ],	SCOPe (2.08)
C	d5bt8c1	Alpha and beta proteins (a/b)	Phosphoglycerate kinase	Phosphoglycerate kinase	automated matches	automated matches	(Acinetobacter baumannii AB5075 ) [TaxId: 1116234 ],	SCOPe (2.08)
C	d5bt8c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Acinetobacter baumannii AB5075 ) [TaxId: 1116234 ],	SCOPe (2.08)
B	d5bt8b1	Alpha and beta proteins (a/b)	Phosphoglycerate kinase	Phosphoglycerate kinase	automated matches	automated matches	(Acinetobacter baumannii AB5075 ) [TaxId: 1116234 ],	SCOPe (2.08)
B	d5bt8b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Acinetobacter baumannii AB5075 ) [TaxId: 1116234 ],	SCOPe (2.08)
A	d5bt8a1	Alpha and beta proteins (a/b)	Phosphoglycerate kinase	Phosphoglycerate kinase	automated matches	automated matches	(Acinetobacter baumannii AB5075 ) [TaxId: 1116234 ],	SCOPe (2.08)
A	d5bt8a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Acinetobacter baumannii AB5075 ) [TaxId: 1116234 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Phosphoglycerate kinase	8069321	3001564	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phosphoglycerate kinase	8069321	3001564	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phosphoglycerate kinase	8069321	3001564	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phosphoglycerate kinase	8069321	3001564	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phosphoglycerate kinase	8069321	3001564	SCOP2B (2022-06-29)
A	SCOP2 Family	Phosphoglycerate kinase	8069320	4000818	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Phosphoglycerate kinase	8069321	3001564	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	PGK_N	e5bt8F2	A: a/b three-layered sandwiches	X: Phosphoglycerate kinase domain 1 (From Topology)	H: Phosphoglycerate kinase domain 1 (From Topology)	T: Phosphoglycerate kinase domain 1	F: PGK_N	ECOD (1.6)
F	PGK_C	e5bt8F1	A: a/b three-layered sandwiches	X: Phosphoglycerate kinase domain 2 (From Topology)	H: Phosphoglycerate kinase domain 2 (From Topology)	T: Phosphoglycerate kinase domain 2	F: PGK_C	ECOD (1.6)
E	PGK_N	e5bt8E1	A: a/b three-layered sandwiches	X: Phosphoglycerate kinase domain 1 (From Topology)	H: Phosphoglycerate kinase domain 1 (From Topology)	T: Phosphoglycerate kinase domain 1	F: PGK_N	ECOD (1.6)
E	PGK_C	e5bt8E2	A: a/b three-layered sandwiches	X: Phosphoglycerate kinase domain 2 (From Topology)	H: Phosphoglycerate kinase domain 2 (From Topology)	T: Phosphoglycerate kinase domain 2	F: PGK_C	ECOD (1.6)
D	PGK_N	e5bt8D1	A: a/b three-layered sandwiches	X: Phosphoglycerate kinase domain 1 (From Topology)	H: Phosphoglycerate kinase domain 1 (From Topology)	T: Phosphoglycerate kinase domain 1	F: PGK_N	ECOD (1.6)
D	PGK_C	e5bt8D2	A: a/b three-layered sandwiches	X: Phosphoglycerate kinase domain 2 (From Topology)	H: Phosphoglycerate kinase domain 2 (From Topology)	T: Phosphoglycerate kinase domain 2	F: PGK_C	ECOD (1.6)
C	PGK_N	e5bt8C1	A: a/b three-layered sandwiches	X: Phosphoglycerate kinase domain 1 (From Topology)	H: Phosphoglycerate kinase domain 1 (From Topology)	T: Phosphoglycerate kinase domain 1	F: PGK_N	ECOD (1.6)
C	PGK_C	e5bt8C2	A: a/b three-layered sandwiches	X: Phosphoglycerate kinase domain 2 (From Topology)	H: Phosphoglycerate kinase domain 2 (From Topology)	T: Phosphoglycerate kinase domain 2	F: PGK_C	ECOD (1.6)
B	PGK_N	e5bt8B2	A: a/b three-layered sandwiches	X: Phosphoglycerate kinase domain 1 (From Topology)	H: Phosphoglycerate kinase domain 1 (From Topology)	T: Phosphoglycerate kinase domain 1	F: PGK_N	ECOD (1.6)
B	PGK_C	e5bt8B1	A: a/b three-layered sandwiches	X: Phosphoglycerate kinase domain 2 (From Topology)	H: Phosphoglycerate kinase domain 2 (From Topology)	T: Phosphoglycerate kinase domain 2	F: PGK_C	ECOD (1.6)
A	PGK_N	e5bt8A1	A: a/b three-layered sandwiches	X: Phosphoglycerate kinase domain 1 (From Topology)	H: Phosphoglycerate kinase domain 1 (From Topology)	T: Phosphoglycerate kinase domain 1	F: PGK_N	ECOD (1.6)
A	PGK_C	e5bt8A2	A: a/b three-layered sandwiches	X: Phosphoglycerate kinase domain 2 (From Topology)	H: Phosphoglycerate kinase domain 2 (From Topology)	T: Phosphoglycerate kinase domain 2	F: PGK_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.50.1260	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphoglycerate kinase, N-terminal domain	CATH (4.3.0)
E	3.40.50.1260	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphoglycerate kinase, N-terminal domain	CATH (4.3.0)
D	3.40.50.1260	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphoglycerate kinase, N-terminal domain	CATH (4.3.0)
C	3.40.50.1260	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphoglycerate kinase, N-terminal domain	CATH (4.3.0)
B	3.40.50.1260	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphoglycerate kinase, N-terminal domain	CATH (4.3.0)
A	3.40.50.1260	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphoglycerate kinase, N-terminal domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Phosphoglycerate kinase	phosphoglycerate kinase activity kinase activity phosphotransferase activity, carboxyl group as acceptor transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding phosphoglycerate kinase activity kinase activity phosphotransferase activity, carboxyl group as acceptor transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding	ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process nucleoside phosphate catabolic process organic acid metabolic process nucleobase-containing compound metabolic process glycolytic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process nucleoside phosphate catabolic process organic acid metabolic process nucleobase-containing compound metabolic process glycolytic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process purine ribonucleotide catabolic process phosphorus metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyruvate metabolic process purine nucleoside diphosphate metabolic process primary metabolic process purine-containing compound catabolic process nucleotide metabolic process nucleobase-containing compound catabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process metabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration catabolic process ATP metabolic process energy derivation by oxidation of organic compounds purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate metabolic process carbohydrate derivative catabolic process ADP catabolic process carboxylic acid metabolic process generation of precursor metabolites and energy purine-containing compound metabolic process ADP metabolic process organophosphate metabolic process purine ribonucleoside diphosphate metabolic process cellular process purine ribonucleoside diphosphate catabolic process monosaccharide metabolic process small molecule biosynthetic process carbohydrate biosynthetic process hexose metabolic process monosaccharide biosynthetic process gluconeogenesis hexose biosynthetic process biosynthetic process glucose metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR001576	Phosphoglycerate kinase	Family
A, B, C, D, E A, B, C, D, E, F	IPR015824	Phosphoglycerate kinase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR036043	Phosphoglycerate kinase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR015911	Phosphoglycerate kinase, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.