5BQ9 | pdb_00005bq9

Crystal structure of uncharacterized protein lpg1496 Legionella pneumophila subsp. pneumophila

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd5bq9b2 All alpha proteins HD-domain/PDEase-like HD-domain/PDEase-like HD-like domain from SidE Lem10 effector (Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ) [TaxId: 272624 ], SCOPe (2.08)
Bd5bq9b1 Alpha and beta proteins (a+b) Lem10 N-terminal domain-like Lem10 N-terminal domain-like Lem10 N-terminal domain Lem10 effector (Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ) [TaxId: 272624 ], SCOPe (2.08)
Bd5bq9b3 Artifacts Tags Tags Tags N-terminal Tags (Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ) [TaxId: 272624 ], SCOPe (2.08)
Ad5bq9a1 All alpha proteins HD-domain/PDEase-like HD-domain/PDEase-like HD-like domain from SidE Lem10 effector (Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ) [TaxId: 272624 ], SCOPe (2.08)
Ad5bq9a2 Alpha and beta proteins (a+b) Lem10 N-terminal domain-like Lem10 N-terminal domain-like Lem10 N-terminal domain Lem10 effector (Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ) [TaxId: 272624 ], SCOPe (2.08)
Ad5bq9a3 Artifacts Tags Tags Tags N-terminal Tags (Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ) [TaxId: 272624 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyHD-domain/PDEase-like 8093167 3000943 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyKLAMP domain-like 8093171 3002687 SCOP2B (2022-06-29)
ASCOP2 FamilySidE-like 8047395 4005622 SCOP2 (2022-06-29)
ASCOP2 FamilyKLAMP domain-like 8093170 4007798 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHD-domain/PDEase-like 8093167 3000943 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyKLAMP domain-like 8093171 3002687 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Blpg1496_Ne5bq9B1 A: a/b three-layered sandwichesX: Repetitive alpha hairpinsH: ARM repeatT: ARM repeatF: lpg1496_NECOD (v294.1)
Bzf-ANAPC11e5bq9B2 A: a/b three-layered sandwichesX: Repetitive alpha hairpinsH: ARM repeatT: ARM repeatF: zf-ANAPC11ECOD (v294.1)
ALactamase_B_2e5bq9A1 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: Cytidine deaminase-likeT: Cytidine deaminase-likeF: Lactamase_B_2ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF20980lpg1496 N-terminal domain (lpg1496_N)lpg1496 N-terminal domainThis domain is found at the N terminus of the uncharacterised Lpg1496 (also known as Lem10) protein from Legionella pneumophila [1,2]. It is also known as KLAMP domain. This domain adopts an alpha/beta structure with two alpha-helices flanked on one ...This domain is found at the N terminus of the uncharacterised Lpg1496 (also known as Lem10) protein from Legionella pneumophila [1,2]. It is also known as KLAMP domain. This domain adopts an alpha/beta structure with two alpha-helices flanked on one side by a five-stranded beta-sheet and a four-stranded on the other. Lpg1496 contains two copies of this domain, known as KLAMP1 and KLAMP2.
Domain
A, B
PF12252SidE phosphodiesterase (PDE) domain (SidE_PDE)SidE phosphodiesterase (PDE) domainThis entry represents the phosphodiesterase (PDE) domain found in the bacterial ubiquitinating enzymes, which belong to the SidE family. This domain catalyses the conjugation of ADP-ribosylated ubiquitin (ADPR-Ub), previously synthesised by the mono- ...This entry represents the phosphodiesterase (PDE) domain found in the bacterial ubiquitinating enzymes, which belong to the SidE family. This domain catalyses the conjugation of ADP-ribosylated ubiquitin (ADPR-Ub), previously synthesised by the mono-ADP-ribosyltransferase (mART) domain, to a serine residue on substrates to generate a protein-phosphoribosyl-Ub (PR-Ub) product. These pathogen proteins are secreted bacterial effector proteins, which are translocated inside the host cell using the Dot/Icm secretion system [1,2]. The SidE family of enzymes carry out ubiquitination of host cell proteins in an E1/E2-independent manner [2,3].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR021014SidE, PDE domainDomain
A, B
IPR048483Lpg1496-like, N-terminal domainDomain