Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| CA [auth HH] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| DA [auth II] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| EA [auth JJ] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| FA [auth KK] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| BA [auth GG] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | V-set | e5bknC1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| CA [auth HH] | V-set | e5bknHH1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| DA [auth II] | V-set | e5bknII1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| EA [auth JJ] | V-set | e5bknJJ1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| FA [auth KK] | V-set | e5bknKK1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| G | V-set | e5bknG1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| K | V-set | e5bknK1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| M | V-set | e5bknM1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| N | V-set | e5bknN1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| O | V-set | e5bknO1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| L | V-set | e5bknL1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| J | V-set | e5bknJ1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| I | V-set | e5bknI1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| H | V-set | e5bknH1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| F | V-set | e5bknF1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| E | V-set | e5bknE1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| D | V-set | e5bknD1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| BA [auth GG] | V-set | e5bknGG1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| B | V-set | e5bknB1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
| A | V-set | e5bknA1 | A: a/b three-layered sandwiches | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: V-set | ECOD (v294.1) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| P, Q [auth S], V [auth a] | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - |
| R [auth T] | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') | - | - | - |
| GA [auth TT], HA [auth UU], T [auth X], U [auth Y] | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - |
| MA [auth qq], W [auth e] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| X [auth h] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| LA [auth ll], Y [auth i] | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| AA [auth n] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| IA [auth WW], KA [auth kk], Z [auth m] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| S [auth V] | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - |
| JA [auth bb] | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - |
| Coat protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR037164 | Satellite virus coat domain superfamily | Homologous Superfamily |
