5B5M | pdb_00005b5m

Crystal structure of the Sr-substituted LH1-RC complex from Tch. tepidum


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth AB]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
XA [auth z]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
TB [auth c]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
TA [auth s]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
RB [auth k]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
RA [auth q]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
PB [auth i]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
PA [auth n]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
NB [auth g]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
LB [auth e]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
JB [auth AL]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
JA [auth 0]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
HB [auth AJ]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
HA [auth 8]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
FB [auth AH]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
FA [auth 6]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
F [auth B]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
DB [auth AF]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
DA [auth 4]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
BB [auth AD]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
BA [auth 2]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
NA [auth t]SCOP2B SuperfamilyPRC-barrel domain 8097584 3000637 SCOP2B (2022-06-29)
NA [auth t]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H, transmembrane region 8100954 3000750 SCOP2B (2022-06-29)
D [auth H]SCOP2B SuperfamilyPRC-barrel domain 8097584 3000637 SCOP2B (2022-06-29)
D [auth H]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H, transmembrane region 8100954 3000750 SCOP2B (2022-06-29)
KA [auth o]SCOP2B SuperfamilyPRC cytochrome c repeat-like 8090735 3002452 SCOP2B (2022-06-29)
KA [auth o]SCOP2B SuperfamilyPRC cytochrome c repeat-like 8073228 3002452 SCOP2B (2022-06-29)
A [auth C]SCOP2B SuperfamilyPRC cytochrome c repeat-like 8090735 3002452 SCOP2B (2022-06-29)
A [auth C]SCOP2B SuperfamilyPRC cytochrome c repeat-like 8073228 3002452 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth AB]VIDe5b5mAB1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
ZVIDe5b5mZ1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
XA [auth z]VIDe5b5mz1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
XVIDe5b5mX1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
VA [auth v]VIDe5b5mv1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
VVIDe5b5mV1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
TB [auth c]VIDe5b5mc1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
TA [auth s]VIDe5b5ms1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
TVIDe5b5mT1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
RB [auth k]VIDe5b5mk1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
RA [auth q]VIDe5b5mq1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
RVIDe5b5mR1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
PB [auth i]VIDe5b5mi1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
PA [auth n]VIDe5b5mn1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
PVIDe5b5mP1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
NB [auth g]VIDe5b5mg1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
NVIDe5b5mN1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
LB [auth e]VIDe5b5me1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
L [auth J]VIDe5b5mJ1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
JB [auth AL]VIDe5b5mAL1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
JA [auth 0]VIDe5b5m01 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
J [auth G]VIDe5b5mG1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
HB [auth AJ]VIDe5b5mAJ1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
HA [auth 8]VIDe5b5m81 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
H [auth E]VIDe5b5mE1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
FB [auth AH]VIDe5b5mAH1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
FA [auth 6]VIDe5b5m61 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
F [auth B]VIDe5b5mB1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
DB [auth AF]VIDe5b5mAF1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
DA [auth 4]VIDe5b5m41 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
BB [auth AD]VIDe5b5mAD1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
BA [auth 2]VIDe5b5m21 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
YA [auth AA]VIDe5b5mAA1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
YVIDe5b5mY1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
WA [auth w]VIDe5b5mw1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
WVIDe5b5mW1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
UA [auth u]VIDe5b5mu1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
UVIDe5b5mU1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
SB [auth l]VIDe5b5ml1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
SA [auth r]VIDe5b5mr1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
SVIDe5b5mS1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
QB [auth j]VIDe5b5mj1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
QA [auth p]VIDe5b5mp1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
QVIDe5b5mQ1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
OB [auth h]VIDe5b5mh1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
OA [auth m]VIDe5b5mm1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
OVIDe5b5mO1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
MB [auth f]VIDe5b5mf1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
M [auth K]VIDe5b5mK1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
KB [auth d]VIDe5b5md1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
K [auth I]VIDe5b5mI1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
IB [auth AK]VIDe5b5mAK1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
IA [auth 9]VIDe5b5m91 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
I [auth F]VIDe5b5mF1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
GB [auth AI]VIDe5b5mAI1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
GA [auth 7]VIDe5b5m71 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
G [auth D]VIDe5b5mD1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
EB [auth AG]VIDe5b5mAG1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
EA [auth 5]VIDe5b5m51 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
E [auth A]VIDe5b5mA1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
CB [auth AE]VIDe5b5mAE1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
CA [auth 3]VIDe5b5m31 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
AB [auth AC]VIDe5b5mAC1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
AA [auth 1]VIDe5b5m11 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
NA [auth t]VIDe5b5mt1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
D [auth H]VIDe5b5mH1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
MA [auth y]VIDe5b5my1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
C [auth M]VIDe5b5mM1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
LA [auth x]VIDe5b5mx1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
B [auth L]VIDe5b5mL1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
KA [auth o]VIDe5b5mo1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)
A [auth C]VIDe5b5mC1 A: alpha arraysX: Thioredoxin-likeH: Nucleic acid-binding proteinT: Chelatase-likeF: VIDECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
LH1 beta polypeptide
LH1 alpha polypeptide
D [auth H],
NA [auth t]
Photosynthetic reaction center H subunit-
C [auth M],
MA [auth y]
Photosynthetic reaction center M subunit
B [auth L],
LA [auth x]
Photosynthetic reaction center L subunit
A [auth C],
KA [auth o]
Photosynthetic reaction center cytochrome c subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR002362Light-harvesting protein B beta chainFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
D [auth H],
NA [auth t]
IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
D [auth H],
NA [auth t]
IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
D [auth H],
NA [auth t]
IPR005652Photosynthetic reaction centre, H subunitFamily
D [auth H],
NA [auth t]
IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
D [auth H],
NA [auth t]
IPR011033PRC-barrel-like superfamilyHomologous Superfamily
D [auth H],
NA [auth t]
IPR027275PRC-barrel domainDomain
C [auth M],
MA [auth y]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
C [auth M],
MA [auth y]
IPR005781Photosynthetic reaction centre, M subunitFamily
C [auth M],
MA [auth y]
IPR000484Photosynthetic reaction centre, L/MFamily
C [auth M],
MA [auth y]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
B [auth L],
LA [auth x]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth L],
LA [auth x]
IPR000484Photosynthetic reaction centre, L/MFamily
B [auth L],
LA [auth x]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
B [auth L],
LA [auth x]
IPR005871Photosynthetic reaction centre, L subunitFamily
A [auth C],
KA [auth o]
IPR036280Multiheme cytochrome superfamilyHomologous Superfamily
A [auth C],
KA [auth o]
IPR023119Multihaem cytochrome, PRC subunit superfamilyHomologous Superfamily
A [auth C],
KA [auth o]
IPR003158Photosynthetic reaction centre, cytochrome c subunitFamily