5B4N | pdb_00005b4n

Structure analysis of function associated loop mutant of substrate recognition domain of Fbs1 ubiquitin ligase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5b4nb_	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	F-box associated region, FBA	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d5b4na_	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	F-box associated region, FBA	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ribosomal_L10	e5b4nB1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Ribosomal_L10	ECOD (v294.1)
A	Ribosomal_L10	e5b4nA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Ribosomal_L10	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)
A	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	F-box only protein 2	binding carbohydrate binding amyloid-beta binding peptide binding denatured protein binding protein binding ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity	catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of cellular process modulation of chemical synaptic transmission signaling catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of cellular process modulation of chemical synaptic transmission signaling regulation of protein catabolic process at postsynapse, modulating synaptic transmission regulation of primary metabolic process cell communication synaptic signaling postsynaptic modulation of chemical synaptic transmission trans-synaptic signaling regulation of biological process regulation of signaling regulation of protein metabolic process biological regulation cell-cell signaling regulation of macromolecule metabolic process regulation of catabolic process chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication regulation of metabolic process regulation of protein catabolic process cellular response to stimulus response to stimulus proteasomal protein catabolic process ERAD pathway cellular response to stress response to chemical response to stress response to endoplasmic reticulum stress negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation negative regulation of cellular process negative regulation of biological process regulation of protein modification process regulation of post-translational protein modification regulation of protein ubiquitination protein ubiquitination macromolecule modification regulation of protein modification by small protein conjugation or removal protein modification process post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal carbohydrate derivative catabolic process glycoprotein catabolic process carbohydrate derivative metabolic process glycoprotein metabolic process proteasome-mediated ubiquitin-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	neuron spine synapse neuron projection dendritic spine plasma membrane bounded cell projection somatodendritic compartment cell projection postsynapse cellular anatomical structure cell junction dendrite dendritic tree extrinsic component of plasma membrane membrane neuron spine synapse neuron projection dendritic spine plasma membrane bounded cell projection somatodendritic compartment cell projection postsynapse cellular anatomical structure cell junction dendrite dendritic tree extrinsic component of plasma membrane membrane plasma membrane synaptic membrane cell periphery extrinsic component of synaptic membrane postsynaptic membrane plasma membrane region extrinsic component of membrane extrinsic component of postsynaptic membrane intracellular anatomical structure cytoplasm cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex glutamatergic synapse membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036047	F-box-like domain superfamily	Homologous Superfamily
A, B	IPR039752	F-box only protein	Family
A, B	IPR007397	F-box associated (FBA) domain	Domain
A, B	IPR001810	F-box domain	Domain
A, B	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A, B	IPR036047	F-box-like domain superfamily	Homologous Superfamily
A, B	IPR039752	F-box only protein	Family
A, B	IPR007397	F-box associated (FBA) domain	Domain
A, B	IPR001810	F-box domain	Domain
A, B	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9H4M3	polycystic ovary syndrome prostate cancer atypical teratoid rhabdoid tumor malignant ependymoma Sclerocystic Ovaries glioblastoma malignant glioma large cell medulloblastoma medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.