5B2G

Crystal structure of human claudin-4 in complex with C-terminal fragment of Clostridium perfringens enterotoxin

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Claudin-like	8048279	4006038	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Claudin-like	8092547	3002606	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Lysozyme-like	8033861	3001879	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Claudin-like	8092547	3002606	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Lysozyme-like	8033861	3001879	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Lysozyme-like	8033861	3001879	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Claudin-like	8092547	3002606	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Lysozyme-like	8033861	3001879	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Claudin-like	8092547	3002606	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PMP22_Claudin	e5b2gA2	A: alpha bundles	X: Bromodomain-like	H: Claudin (From Topology)	T: Claudin	F: PMP22_Claudin	ECOD (1.6)
A	Phage_lysozyme_2	e5b2gA1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Phage_lysozyme_2	ECOD (1.6)
C	PMP22_Claudin	e5b2gC2	A: alpha bundles	X: Bromodomain-like	H: Claudin (From Topology)	T: Claudin	F: PMP22_Claudin	ECOD (1.6)
C	Phage_lysozyme_2	e5b2gC1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Phage_lysozyme_2	ECOD (1.6)
E	PMP22_Claudin	e5b2gE2	A: alpha bundles	X: Bromodomain-like	H: Claudin (From Topology)	T: Claudin	F: PMP22_Claudin	ECOD (1.6)
E	Phage_lysozyme_2	e5b2gE1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Phage_lysozyme_2	ECOD (1.6)
G	PMP22_Claudin	e5b2gG2	A: alpha bundles	X: Bromodomain-like	H: Claudin (From Topology)	T: Claudin	F: PMP22_Claudin	ECOD (1.6)
G	Phage_lysozyme_2	e5b2gG1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Phage_lysozyme_2	ECOD (1.6)
B	EUF07631	e5b2gB1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: EUF07631	ECOD (1.6)
D	EUF07631	e5b2gD1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: EUF07631	ECOD (1.6)
F	EUF07631	e5b2gF1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: EUF07631	ECOD (1.6)
H	EUF07631	e5b2gH1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: EUF07631	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.120.1050	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
D	2.60.120.1050	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
F	2.60.120.1050	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
H	2.60.120.1050	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G	PF00822	PMP-22/EMP/MP20/Claudin family (PMP22_Claudin)	PMP-22/EMP/MP20/Claudin family	-	Family
A, C, E, G	PF00959	Phage lysozyme (Phage_lysozyme)	Phage lysozyme	This family includes lambda phage lysozyme and E. coli endolysin.	Domain
B, D, F, H	PF03505	Clostridium enterotoxin (Clenterotox)	Clostridium enterotoxin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G	Endolysin,Claudin-4	monoatomic anion transmembrane transporter activity chloride transmembrane transporter activity monoatomic ion channel activity passive transmembrane transporter activity inorganic molecular entity transmembrane transporter activity channel activity monoatomic anion channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity inorganic anion transmembrane transporter activity chloride channel activity structural molecule activity identical protein binding monoatomic anion transmembrane transporter activity chloride transmembrane transporter activity monoatomic ion channel activity passive transmembrane transporter activity inorganic molecular entity transmembrane transporter activity channel activity monoatomic anion channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity inorganic anion transmembrane transporter activity chloride channel activity structural molecule activity identical protein binding protein binding binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity hydrolase activity, acting on glycosyl bonds peptidoglycan muralytic activity hydrolase activity, hydrolyzing O-glycosyl compounds lysozyme activity hydrolase activity catalytic activity	regulation of catalytic activity positive regulation of protein metabolic process positive regulation of peptidase activity positive regulation of biological process regulation of primary metabolic process positive regulation of molecular function positive regulation of metabolic process organic substance metabolic process regulation of proteolysis proteolysis positive regulation of macromolecule metabolic process protein metabolic process regulation of biological process organonitrogen compound metabolic process regulation of catalytic activity positive regulation of protein metabolic process positive regulation of peptidase activity positive regulation of biological process regulation of primary metabolic process positive regulation of molecular function positive regulation of metabolic process organic substance metabolic process regulation of proteolysis proteolysis positive regulation of macromolecule metabolic process protein metabolic process regulation of biological process organonitrogen compound metabolic process regulation of protein metabolic process regulation of peptidase activity biological regulation positive regulation of catalytic activity primary metabolic process regulation of macromolecule metabolic process regulation of molecular function positive regulation of hydrolase activity regulation of metallopeptidase activity regulation of hydrolase activity positive regulation of proteolysis positive regulation of metallopeptidase activity metabolic process macromolecule metabolic process regulation of metabolic process rhythmic process circadian rhythm cell adhesion cell-cell adhesion calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules cellular process cell-cell adhesion via plasma-membrane adhesion molecules positive regulation of response to wounding wound healing response to stimulus regulation of response to wounding positive regulation of response to stimulus positive regulation of wound healing regulation of response to stimulus response to stress regulation of response to stress regulation of wound healing response to wounding multi-multicellular organism process multicellular organismal process reproductive process female pregnancy multi-organism reproductive process response to organic substance response to ketone response to lipid response to endogenous stimulus response to progesterone response to oxygen-containing compound response to hormone response to steroid hormone response to chemical response to organic cyclic compound developmental process establishment of skin barrier epithelium development skin development skin epidermis development epidermis development anatomical structure development animal organ development tissue development anatomical structure morphogenesis regulation of developmental process cell morphogenesis regulation of cell morphogenesis regulation of anatomical structure morphogenesis bicellular tight junction assembly tight junction organization apical junction assembly cellular component organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly tight junction assembly cellular component organization or biogenesis cell-cell junction assembly cell-cell junction organization renal system process system process renal absorption positive regulation of locomotion regulation of cell motility regulation of cellular process positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion positive regulation of cellular process biological process involved in interspecies interaction between organisms response to other organism defense response response to external stimulus response to biotic stimulus defense response to bacterium defense response to other organism response to bacterium response to external biotic stimulus organonitrogen compound catabolic process carbohydrate derivative catabolic process catabolic process peptidoglycan catabolic process glycosaminoglycan metabolic process carbohydrate derivative metabolic process aminoglycan catabolic process macromolecule catabolic process glycosaminoglycan catabolic process aminoglycan metabolic process peptidoglycan metabolic process organic substance catabolic process symbiont-mediated cytolysis of host cell viral life cycle disruption of cell in another organism cytolysis biological process involved in interaction with host biological process involved in symbiotic interaction viral release from host cell by cytolysis disruption of cellular anatomical structure in another organism exit from host cell viral process cytolysis in another organism viral release from host cell disruption of anatomical structure in another organism symbiont-mediated killing of host cell killing of cells of another organism cell killing disruption of plasma membrane integrity in another organism cell wall organization or biogenesis cell wall macromolecule catabolic process cell wall macromolecule metabolic process	protein-containing complex transmembrane transporter complex membrane chloride channel complex membrane protein complex cellular anatomical entity transporter complex monoatomic ion channel complex cell-cell junction anchoring junction cell junction cell periphery apical part of cell plasma membrane protein-containing complex transmembrane transporter complex membrane chloride channel complex membrane protein complex cellular anatomical entity transporter complex monoatomic ion channel complex cell-cell junction anchoring junction cell junction cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane basal part of cell basal plasma membrane apicolateral plasma membrane apical junction complex bicellular tight junction tight junction lateral plasma membrane host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region
B, D, F, H	Heat-labile enterotoxin B chain	toxin activity	-	extracellular region cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G	IPR006187	Claudin	Family
A, C, E, G	IPR004031	PMP-22/EMP/MP20/Claudin	Family
A, C, E, G	IPR017974	Claudin, conserved site	Conserved Site
A, C, E, G	IPR003550	Claudin-4	Family
A, C, E, G	IPR001165	T4-type lysozyme	Family
A, C, E, G	IPR034690	Endolysin T4 type	Family
A, C, E, G	IPR002196	Glycoside hydrolase, family 24	Family
A, C, E, G	IPR023347	Lysozyme domain superfamily	Homologous Superfamily
A, C, E, G	IPR023346	Lysozyme-like domain superfamily	Homologous Superfamily
B, D, F, H	IPR003897	Clostridium enterotoxin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C, E, G	Pharos: O14493	polycystic ovary syndrome invasive ductal breast carcinoma breast carcinoma Neoplasm Recurrence, Local breast cancer gastric carcinoma lung adenocarcinoma malignant pancreatic neoplasm ovarian cancer Williams syndrome interstitial cystitis malignant mesothelioma pancreatic intraductal papillary-mucinous carcinoma ductal breast carcinoma in situ osteosarcoma polycystic ovary syndrome invasive ductal breast carcinoma breast carcinoma Neoplasm Recurrence, Local breast cancer gastric carcinoma lung adenocarcinoma malignant pancreatic neoplasm ovarian cancer Williams syndrome interstitial cystitis malignant mesothelioma pancreatic intraductal papillary-mucinous carcinoma ductal breast carcinoma in situ osteosarcoma pancreatic intraductal papillary-mucinous neoplasm

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, C, E, G	OPM	Transmembrane	Alpha-helical polytopic	Tetraspan junctional complexes	Claudin

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, C, E, G	PDBTM	Annotated as membrane protein by PDBTM

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.