5AZS
Crystal structure of a membrane protein from Pseudomonas aeruginosa
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- AMR Gene: CARD Annotation
- AMR Gene Family: CARD Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5azsa_ | Membrane and cell surface proteins and peptides | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | automated matches | automated matches | (Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ], | SCOPe (2.08) |
B | d5azsb_ | Membrane and cell surface proteins and peptides | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | automated matches | automated matches | (Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ], | SCOPe (2.08) |
C | d5azsc_ | Membrane and cell surface proteins and peptides | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | automated matches | automated matches | (Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Outer membrane efflux proteins (OEP) | 8085539 | 3000246 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Outer membrane efflux proteins (OEP) | 8085539 | 3000246 | SCOP2B (2022-06-29) |
C | SCOP2 Family | Outer membrane efflux proteins (OEP) | 8085538 | 4003096 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Outer membrane efflux proteins (OEP) | 8085539 | 3000246 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02321 | e5azsA1 | A: a+b duplicates or obligate multimers | X: Outer membrane efflux proteins (OEP) (From Topology) | H: Outer membrane efflux proteins (OEP) (From Topology) | T: Outer membrane efflux proteins (OEP) | F: PF02321 | ECOD (1.6) |
B | PF02321 | e5azsB1 | A: a+b duplicates or obligate multimers | X: Outer membrane efflux proteins (OEP) (From Topology) | H: Outer membrane efflux proteins (OEP) (From Topology) | T: Outer membrane efflux proteins (OEP) | F: PF02321 | ECOD (1.6) |
C | PF02321 | e5azsC1 | A: a+b duplicates or obligate multimers | X: Outer membrane efflux proteins (OEP) (From Topology) | H: Outer membrane efflux proteins (OEP) (From Topology) | T: Outer membrane efflux proteins (OEP) | F: PF02321 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1600.10 | Mainly Alpha | Up-down Bundle | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | CATH (4.3.0) |
A | 2.20.200.10 | Mainly Beta | Single Sheet | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | CATH (4.3.0) |
B | 1.20.1600.10 | Mainly Alpha | Up-down Bundle | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | CATH (4.3.0) |
B | 2.20.200.10 | Mainly Beta | Single Sheet | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | CATH (4.3.0) |
C | 1.20.1600.10 | Mainly Alpha | Up-down Bundle | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | CATH (4.3.0) |
C | 2.20.200.10 | Mainly Beta | Single Sheet | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | CATH (4.3.0) |
AMR Gene: CARD Annotation CARD Database Homepage
Chains | Accession | Short Name | Description | Provenance Source (Version) |
---|---|---|---|---|
ARO:3000802 | OprJ | OprJ is the outer membrane channel component of the MexCD-OprJ multidrug efflux complex. | CARD (3.2.9) |
AMR Gene Family: CARD Annotation CARD Database Homepage
Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
---|---|---|---|---|---|
ARO:0010004 | resistance-nodulation-cell division (RND) antibiotic efflux pump | macrolide antibiotic, fluoroquinolone antibiotic, aminoglycoside antibiotic, cephalosporin, penam, tetracycline antibiotic, aminocoumarin antibiotic, diaminopyrimidine antibiotic, phenicol antibiotic | antibiotic efflux | CARD (3.2.9) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02321 | Outer membrane efflux protein (OEP) | Outer membrane efflux protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Outer membrane protein OprJ |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003423 | Outer membrane efflux protein | Family | |
IPR010131 | RND efflux system, outer membrane lipoprotein, NodT | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Outer membrane efflux proteins (n=12,S=18) trimeric | Outer membrane efflux proteins |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Beta-Barrel Membrane Proteins: Monomeric/Dimeric | OprJ drug discharge outer membrane protein |