Annotations: 5AYH

Structure of the entire dynein stalk region

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5ayhA1	A: beta barrels	X: Lipocalins/Streptavidin	H: Fibronectin type I module-like	T: Fibronectin type I module	F:	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Cytoplasmic dynein 1 heavy chain 1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding dynein light intermediate chain binding protein binding microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity minus-end-directed microtubule motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity dynein intermediate chain binding identical protein binding	cellular process cell division establishment of organelle localization cellular localization transport nucleus localization intracellular transport establishment of localization localization organelle localization establishment of localization in cell nuclear migration cellular component biogenesis cellular component organization cellular process cell division establishment of organelle localization cellular localization transport nucleus localization intracellular transport establishment of localization localization organelle localization establishment of localization in cell nuclear migration cellular component biogenesis cellular component organization organelle organization cellular component assembly organelle assembly P-body assembly membraneless organelle assembly cellular component organization or biogenesis microtubule-based movement microtubule-based process cilium movement stress granule assembly microtubule cytoskeleton organization spindle localization establishment of spindle localization cell cycle cytoskeleton organization cell cycle process regulation of localization regulation of biological process biological regulation metaphase chromosome alignment chromosome localization nuclear chromosome segregation regulation of metaphase plate congression chromosome segregation positive regulation of organelle organization regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization positive regulation of biological process positive regulation of spindle assembly positive regulation of cell cycle process regulation of cell cycle positive regulation of cellular process spindle organization regulation of cell cycle process positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization regulation of microtubule-based process regulation of spindle organization regulation of cellular component biogenesis spindle assembly regulation of organelle organization positive regulation of cell cycle regulation of spindle assembly regulation of organelle assembly regulation of microtubule cytoskeleton organization positive regulation of organelle assembly regulation of mitotic spindle organization mitotic cell cycle microtubule cytoskeleton organization involved in mitosis mitotic spindle organization mitotic cell cycle process cytoplasmic microtubule organization supramolecular fiber organization multicellular organismal process homeostatic process adaptive thermogenesis multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis positive regulation of multicellular organismal process regulation of multicellular organismal process regulation of transport positive regulation of transport regulation of cellular localization positive regulation of intracellular transport regulation of intracellular transport retrograde axonal transport axonal transport axo-dendritic transport microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport	membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system cytoplasm somatodendritic compartment cell body neuronal cell body membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system cytoplasm somatodendritic compartment cell body neuronal cell body axon cell projection neuron projection plasma membrane bounded cell projection protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex intracellular membraneless organelle cytoskeleton membraneless organelle microtubule associated complex microtubule cytoskeleton actin-based cell projection filopodium polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex neuron projection cytoplasm axon cytoplasm cell periphery cell cortex centrosome microtubule organizing center manchette cytoplasmic microtubule

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR026983	Dynein heavy chain	Family
A	IPR013602	Dynein heavy chain, linker	Domain
A	IPR041658	Dynein heavy chain, AAA lid domain	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR042222	Dynein heavy chain, domain 2, N-terminal	Homologous Superfamily
A	IPR043160	Dynein heavy chain, C-terminal domain, barrel region	Homologous Superfamily
A	IPR042219	Dynein heavy chain, AAA lid domain superfamily	Homologous Superfamily
A	IPR035706	Dynein heavy chain, ATP-binding dynein motor region	Domain
A	IPR041228	Dynein heavy chain, C-terminal domain	Domain
A	IPR054354	Dynein 2 heavy chain 1, cytoplasmic, ATPase lid domain	Domain
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR041466	Dynein heavy chain, AAA 5 extension domain	Domain
A	IPR042228	Dynein heavy chain, linker, subdomain 3	Homologous Superfamily
A	IPR035699	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Domain
A	IPR024743	Dynein heavy chain, coiled coil stalk	Domain
A	IPR013594	Dynein heavy chain, tail	Domain
A	IPR043157	Dynein heavy chain, AAA1 domain, small subdomain	Homologous Superfamily
A	IPR004273	Dynein heavy chain, D6 P-loop domain	Domain
A	IPR024317	Dynein heavy chain, AAA module D4	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5AYH | pdb_00005ayh

Structure of the entire dynein stalk region

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage