5AYD | pdb_00005ayd

Crystal structure of Ruminococcus albus beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2) in complexes with phosphate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d5aydf_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	automated matches	(Hominimerdicola alba 7 = DSM 20455 ) [TaxId: 697329 ],	SCOPe (2.08)
E	d5ayde_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	automated matches	(Hominimerdicola alba 7 = DSM 20455 ) [TaxId: 697329 ],	SCOPe (2.08)
D	d5aydd_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	automated matches	(Hominimerdicola alba 7 = DSM 20455 ) [TaxId: 697329 ],	SCOPe (2.08)
C	d5aydc_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	automated matches	(Hominimerdicola alba 7 = DSM 20455 ) [TaxId: 697329 ],	SCOPe (2.08)
B	d5aydb_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	automated matches	(Hominimerdicola alba 7 = DSM 20455 ) [TaxId: 697329 ],	SCOPe (2.08)
A	d5ayda_	All beta proteins	5-bladed beta-propeller	Arabinanase/levansucrase/invertase	TM1225-like predicted glycosylases	automated matches	(Hominimerdicola alba 7 = DSM 20455 ) [TaxId: 697329 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Furanosidase-like	8089504	3000845	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Furanosidase-like	8089504	3000845	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Furanosidase-like	8089504	3000845	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Furanosidase-like	8089504	3000845	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Furanosidase-like	8089504	3000845	SCOP2B (2022-06-29)
A	SCOP2 Family	TM1225-like predicted glycosylases	8089503	4001864	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Furanosidase-like	8089504	3000845	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Hema_esterase	e5aydF1	A: a/b three-layered sandwiches	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F: Hema_esterase	ECOD (v294.1)
E	Hema_esterase	e5aydE1	A: a/b three-layered sandwiches	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F: Hema_esterase	ECOD (v294.1)
D	Hema_esterase	e5aydD1	A: a/b three-layered sandwiches	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F: Hema_esterase	ECOD (v294.1)
C	Hema_esterase	e5aydC1	A: a/b three-layered sandwiches	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F: Hema_esterase	ECOD (v294.1)
B	Hema_esterase	e5aydB1	A: a/b three-layered sandwiches	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F: Hema_esterase	ECOD (v294.1)
A	Hema_esterase	e5aydA1	A: a/b three-layered sandwiches	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F: Hema_esterase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
E	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
D	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
C	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
B	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)
A	2.115.10.20	Mainly Beta	5 Propeller	Tachylectin-2	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Beta-1,4-mannooligosaccharide phosphorylase	glycosyltransferase activity transferase activity catalytic activity	cellular component organization cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR007184	Mannoside phosphorylase	Family
A, B, C, D, E A, B, C, D, E, F	IPR023296	Glycosyl hydrolase, five-bladed beta-propeller domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.