Annotations: 5AFQ

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HTH_9	e5afqA2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: HTH_9	ECOD (1.6)
A	HTH_9_1	e5afqA4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: HTH_9_1	ECOD (1.6)
A	RNA_pol_Rpc82_1	e5afqA1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: RNA_pol_Rpc82_1	ECOD (1.6)
A	KOG2587_2nd_1	e5afqA5	A: alpha bundles	X: Long alpha-hairpin	H: RPC62 helical hairpin domain (From Topology)	T: RPC62 helical hairpin domain	F: KOG2587_2nd_1	ECOD (1.6)
B	HTH_9	e5afqB3	A: alpha arrays	X: HTH	H: HTH	T: winged	F: HTH_9	ECOD (1.6)
B	HTH_9_1	e5afqB2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: HTH_9_1	ECOD (1.6)
B	RNA_pol_Rpc82_1	e5afqB1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: RNA_pol_Rpc82_1	ECOD (1.6)
B	KOG2587_2nd_1	e5afqB5	A: alpha bundles	X: Long alpha-hairpin	H: RPC62 helical hairpin domain (From Topology)	T: RPC62 helical hairpin domain	F: KOG2587_2nd_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF08221	RNA polymerase III subunit RPC82 helix-turn-helix domain (HTH_9)	RNA polymerase III subunit RPC82 helix-turn-helix domain	This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In Saccharomyces cerevisiae, the ...	This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In Saccharomyces cerevisiae, the enzyme is composed of 15 subunits, ranging from 160 to about 10 kDa [1]. This region is a probably DNA-binding helix-turn-helix.	Domain
A, B	PF20912	DNA-directed RNA polymerase III subunit RPC3, helical hairpin domain (RPC3_helical)	DNA-directed RNA polymerase III subunit RPC3, helical hairpin domain	This domain is found in the subunit RPC3 (also known as RPC62) of the eukaryotic DNA-directed RNA polymerase III, which synthesises small RNAs, such as 5S rRNA and tRNAs. RPC3 shows four defined domains folded around a fifth C-terminal domain consist ...	This domain is found in the subunit RPC3 (also known as RPC62) of the eukaryotic DNA-directed RNA polymerase III, which synthesises small RNAs, such as 5S rRNA and tRNAs. RPC3 shows four defined domains folded around a fifth C-terminal domain consisting of two long alpha- helices (this entry). This domain appears to be reminiscent of coiled- coil motifs [1].	Domain
A, B	PF05645	RNA polymerase III subunit RPC82 (RNA_pol_Rpc82)	RNA polymerase III subunit RPC82	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3	DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding organic cyclic compound binding single-stranded DNA binding nucleic acid binding	regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process transcription by RNA polymerase III regulation of RNA biosynthetic process regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process transcription by RNA polymerase III regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase III regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus regulation of response to external stimulus positive regulation of biological process positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of immune response regulation of response to stress regulation of immune system process positive regulation of immune system process positive regulation of innate immune response regulation of innate immune response regulation of response to stimulus positive regulation of defense response regulation of immune response defense response to virus response to virus multicellular organismal process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process regulation of interferon-beta production interferon-beta production positive regulation of cellular process positive regulation of type I interferon production type I interferon production positive regulation of gene expression positive regulation of multicellular organismal process positive regulation of interferon-beta production positive regulation of cytokine production positive regulation of cellular biosynthetic process regulation of type I interferon production	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex catalytic complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex transferase complex, transferring phosphorus-containing groups intracellular organelle nuclear DNA-directed RNA polymerase complex intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex catalytic complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex transferase complex, transferring phosphorus-containing groups intracellular organelle nuclear DNA-directed RNA polymerase complex organelle RNA polymerase complex RNA polymerase III complex DNA-directed RNA polymerase complex intracellular protein-containing complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
C [auth D], D [auth E]	RPC32 BETA (RPC7L)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR008806	RNA polymerase III Rpc82, C -terminal	Domain
A, B	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR013197	RNA polymerase III subunit RPC82-related, helix-turn-helix	Domain
A, B	IPR039748	DNA-directed RNA polymerase III subunit RPC3	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9BUI4	breast carcinoma medulloblastoma herpes zoster ovarian cancer large cell medulloblastoma pancreatic intraductal papillary-mucinous neoplasm

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.