Crystal structure of II9 variant of Biphenyl dioxygenase from Burkholderia xenovorans LB400 in complex with biphenyl
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| X | SCOP2B Superfamily | NTF2-like | 8074179 | 3000472 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | NTF2-like | 8074179 | 3000472 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | NTF2-like | 8074179 | 3000472 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | NTF2-like | 8074179 | 3000472 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | NTF2-like | 8074179 | 3000472 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | NTF2-like | 8074179 | 3000472 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | NTF2-like | 8074179 | 3000472 | SCOP2B (2022-06-29) |
| J | SCOP2 Family | Ring hydroxylating beta subunit-like | 8074178 | 4001024 | SCOP2 (2022-06-29) |
| J | SCOP2 Superfamily | NTF2-like | 8074179 | 3000472 | SCOP2 (2022-06-29) |
| H | SCOP2B Superfamily | NTF2-like | 8074179 | 3000472 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | NTF2-like | 8074179 | 3000472 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | NTF2-like | 8074179 | 3000472 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | NTF2-like | 8074179 | 3000472 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| X | BAH | e5aewX1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| V | BAH | e5aewV1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| T | BAH | e5aewT1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| R | BAH | e5aewR1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| P | BAH | e5aewP1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| N | BAH | e5aewN1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| L | BAH | e5aewL1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| J | BAH | e5aewJ1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| H | BAH | e5aewH1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| F | BAH | e5aewF1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| D | BAH | e5aewD1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| B | BAH | e5aewB1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| W | BAH | e5aewW1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| U | BAH | e5aewU2 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| S | BAH | e5aewS1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| Q | BAH | e5aewQ1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| O | BAH | e5aewO1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| M | BAH | e5aewM1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| K | BAH | e5aewK2 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| I | BAH | e5aewI1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| G | BAH | e5aewG2 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| E | BAH | e5aewE1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| C | BAH | e5aewC1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
| A | BAH | e5aewA1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: SH3 | T: SH3 | F: BAH | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00866 | Ring hydroxylating beta subunit (Ring_hydroxyl_B) | Ring hydroxylating beta subunit | This subunit has a similar structure to NTF-2 and scytalone dehydratase. | Domain | |
| PF00848 | Ring hydroxylating alpha subunit (catalytic domain) (Ring_hydroxyl_A) | Ring hydroxylating alpha subunit (catalytic domain) | This family is the catalytic domain of aromatic-ring- hydroxylating dioxygenase systems. The active site contains a non-heme ferrous ion coordinated by three ligands. | Domain | |
| PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain |














