5AA6 | pdb_00005aa6

Homohexameric Structure of the second Vanadate-Dependent Bromoperoxidase (AnII) from Ascophyllum nodosum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d5aa6f_	All alpha proteins	Acid phosphatase/Vanadium-dependent haloperoxidase	Acid phosphatase/Vanadium-dependent haloperoxidase	automated matches	automated matches	(Ascophyllum nodosum ) [TaxId: 52969 ],	SCOPe (2.08)
E	d5aa6e_	All alpha proteins	Acid phosphatase/Vanadium-dependent haloperoxidase	Acid phosphatase/Vanadium-dependent haloperoxidase	automated matches	automated matches	(Ascophyllum nodosum ) [TaxId: 52969 ],	SCOPe (2.08)
D	d5aa6d_	All alpha proteins	Acid phosphatase/Vanadium-dependent haloperoxidase	Acid phosphatase/Vanadium-dependent haloperoxidase	automated matches	automated matches	(Ascophyllum nodosum ) [TaxId: 52969 ],	SCOPe (2.08)
C	d5aa6c_	All alpha proteins	Acid phosphatase/Vanadium-dependent haloperoxidase	Acid phosphatase/Vanadium-dependent haloperoxidase	automated matches	automated matches	(Ascophyllum nodosum ) [TaxId: 52969 ],	SCOPe (2.08)
B	d5aa6b_	All alpha proteins	Acid phosphatase/Vanadium-dependent haloperoxidase	Acid phosphatase/Vanadium-dependent haloperoxidase	automated matches	automated matches	(Ascophyllum nodosum ) [TaxId: 52969 ],	SCOPe (2.08)
A	d5aa6a_	All alpha proteins	Acid phosphatase/Vanadium-dependent haloperoxidase	Acid phosphatase/Vanadium-dependent haloperoxidase	automated matches	automated matches	(Ascophyllum nodosum ) [TaxId: 52969 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Acid phosphatase/Vanadium-dependent haloperoxidase	8083420	3001110	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Acid phosphatase/Vanadium-dependent haloperoxidase	8083420	3001110	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Acid phosphatase/Vanadium-dependent haloperoxidase	8083420	3001110	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Acid phosphatase/Vanadium-dependent haloperoxidase	8083420	3001110	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Acid phosphatase/Vanadium-dependent haloperoxidase	8083420	3001110	SCOP2B (2022-06-29)
A	SCOP2 Family	Haloperoxidase (bromoperoxidase)	8083419	4001228	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Acid phosphatase/Vanadium-dependent haloperoxidase	8083420	3001110	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F		e5aa6F1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
E		e5aa6E1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
D		e5aa6D1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
C		e5aa6C1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)
B		e5aa6B1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F:	ECOD (v294.1)
A		e5aa6A1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.10.606.10	Mainly Alpha	Orthogonal Bundle	Vanadium-containing Chloroperoxidase	domain 2	CATH (4.3.0)
E	1.10.606.10	Mainly Alpha	Orthogonal Bundle	Vanadium-containing Chloroperoxidase	domain 2	CATH (4.3.0)
D	1.10.606.10	Mainly Alpha	Orthogonal Bundle	Vanadium-containing Chloroperoxidase	domain 2	CATH (4.3.0)
C	1.10.606.10	Mainly Alpha	Orthogonal Bundle	Vanadium-containing Chloroperoxidase	domain 2	CATH (4.3.0)
B	1.10.606.10	Mainly Alpha	Orthogonal Bundle	Vanadium-containing Chloroperoxidase	domain 2	CATH (4.3.0)
A	1.10.606.10	Mainly Alpha	Orthogonal Bundle	Vanadium-containing Chloroperoxidase	domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	VANADIUM-DEPENDENT BROMOPEROXIDASE 2	peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR036938	Phosphatidic acid phosphatase type 2/haloperoxidase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR016119	Bromoperoxidase/chloroperoxidase C-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR052559	Vanadium-dependent haloperoxidase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.