5A6C | pdb_00005a6c

Concomitant binding of Afadin to LGN and F-actin directs planar spindle orientation

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	TPR_11_2	e5a6cB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: TPR_11_2	ECOD (1.6)
A	TPR_11_1	e5a6cA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: TPR_11_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)
A	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13181	Tetratricopeptide repeat (TPR_8)	Tetratricopeptide repeat	-	Repeat
A, B	PF13374	Tetratricopeptide repeat (TPR_10)	Tetratricopeptide repeat	-	Repeat
A, B	PF13176	Tetratricopeptide repeat (TPR_7)	Tetratricopeptide repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	G-PROTEIN-SIGNALING MODULATOR 2, AFADIN	small GTPase binding protein binding binding enzyme binding GTPase binding cytoskeletal protein binding actin binding protein-containing complex binding actin filament binding cell adhesion molecule binding cadherin binding protein domain specific binding nucleoside phosphate binding nucleotide binding small GTPase binding protein binding binding enzyme binding GTPase binding cytoskeletal protein binding actin binding protein-containing complex binding actin filament binding cell adhesion molecule binding cadherin binding protein domain specific binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding GTPase regulator activity enzyme regulator activity GDP-dissociation inhibitor activity nucleoside-triphosphatase regulator activity molecular function regulator activity G-protein alpha-subunit binding identical protein binding dynein complex binding	regulation of biological process regulation of cellular process positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process positive regulation of cell-cell adhesion cell adhesion cell-cell adhesion positive regulation of cell-cell adhesion mediated by cadherin cell-cell adhesion mediated by cadherin cellular process regulation of cell-cell adhesion positive regulation of cellular process regulation of biological process regulation of cellular process positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process positive regulation of cell-cell adhesion cell adhesion cell-cell adhesion positive regulation of cell-cell adhesion mediated by cadherin cell-cell adhesion mediated by cadherin cellular process regulation of cell-cell adhesion positive regulation of cellular process regulation of cell-cell adhesion mediated by cadherin regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process developmental process epithelium development endothelial cell differentiation cellular developmental process endothelium development cell development tissue development epithelial cell differentiation endothelial cell development establishment of endothelial intestinal barrier epithelial cell development cell differentiation establishment of endothelial barrier anatomical structure development signaling cell-cell signaling cell communication cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis pore complex assembly cellular response to stimulus response to stimulus signal transduction bicellular tight junction assembly tight junction organization apical junction assembly cell junction organization cell junction assembly tight junction assembly cell-cell junction assembly cell-cell junction organization negative regulation of locomotion regulation of cell motility negative regulation of biological process regulation of locomotion negative regulation of cellular process regulation of cell migration negative regulation of cell motility cell migration cell motility negative regulation of cell migration locomotion regulation of localization localization regulation of protein localization macromolecule localization intracellular protein localization establishment of protein localization cellular localization establishment of protein localization to membrane establishment of protein localization to plasma membrane localization within membrane establishment of localization protein localization to postsynaptic specialization membrane protein localization to postsynaptic membrane protein localization to cell periphery protein localization to synapse protein localization to membrane protein-containing complex localization neurotransmitter receptor localization to postsynaptic specialization membrane regulation of postsynaptic membrane neurotransmitter receptor levels protein localization to organelle protein localization to postsynapse regulation of biological quality protein localization to cell junction receptor localization to synapse cell division positive regulation of organelle organization regulation of cytoskeleton organization regulation of cellular component organization positive regulation of cellular component organization microtubule cytoskeleton organization positive regulation of spindle assembly membraneless organelle assembly positive regulation of cell cycle process cell cycle regulation of cell cycle chromosome segregation spindle organization cell cycle process organelle assembly regulation of cell cycle process positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization regulation of microtubule-based process regulation of spindle organization regulation of cellular component biogenesis spindle assembly regulation of organelle organization positive regulation of cell cycle regulation of spindle assembly organelle organization regulation of organelle assembly microtubule-based process cytoskeleton organization regulation of microtubule cytoskeleton organization positive regulation of organelle assembly regulation of mitotic spindle organization mitotic cell cycle microtubule cytoskeleton organization involved in mitosis mitotic spindle organization mitotic cell cycle process response to light stimulus response to light intensity response to radiation response to abiotic stimulus positive regulation of protein localization to cell periphery positive regulation of protein localization to cell cortex regulation of protein localization to cell periphery regulation of protein localization to cell cortex positive regulation of protein localization protein localization to cell cortex establishment of organelle localization spindle localization establishment or maintenance of cell polarity establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell establishment of cell polarity establishment of mitotic spindle orientation maintenance of centrosome location centrosome localization microtubule organizing center localization maintenance of organelle location maintenance of location in cell maintenance of location G protein-coupled receptor signaling pathway	cellular anatomical structure cell junction cell-cell junction anchoring junction membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle cellular anatomical structure cell junction cell-cell junction anchoring junction membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen cytoplasm cytosol cell periphery plasma membrane membrane cell-cell contact zone adherens junction tight junction protein-containing complex pore complex membrane protein complex cell cortex centrosome microtubule organizing center cytoskeleton microtubule cytoskeleton cell cortex region cytoplasmic region lateral cell cortex lateral part of cell postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization synapse asymmetric synapse lateral plasma membrane mitotic spindle spindle mitotic spindle pole spindle pole

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR002710	Dilute domain	Domain
A, B	IPR028842	Afadin	Family
A, B	IPR000159	Ras-associating domain	Domain
A, B	IPR008984	SMAD/FHA domain superfamily	Homologous Superfamily
A, B	IPR000253	Forkhead-associated (FHA) domain	Domain
A, B	IPR036034	PDZ superfamily	Homologous Superfamily
A, B	IPR037977	Afadin, cargo binding domain	Domain
A, B	IPR001478	PDZ domain	Domain
A, B	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
A, B	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B	IPR003109	GoLoco motif	Conserved Site
A, B	IPR019734	Tetratricopeptide repeat	Repeat
A, B	IPR052386	G-protein-signaling modulator	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P81274	astrocytic tumor glioblastoma malignant glioma medulloblastoma osteosarcoma pilocytic astrocytoma atypical teratoid rhabdoid tumor hereditary spastic paraplegia malignant mesothelioma mucocutaneous lymph node syndrome ovarian cancer pituitary cancer cancer malignant ependymoma malignant pancreatic neoplasm astrocytic tumor glioblastoma malignant glioma medulloblastoma osteosarcoma pilocytic astrocytoma atypical teratoid rhabdoid tumor hereditary spastic paraplegia malignant mesothelioma mucocutaneous lymph node syndrome ovarian cancer pituitary cancer cancer malignant ependymoma malignant pancreatic neoplasm oligodendroglioma pancreatic ductal adenocarcinoma spina bifida Chudley-McCullough syndrome osteosarcoma pancreatic intraductal papillary-mucinous neoplasm pituitary cancer Becker muscular dystrophy cystic fibrosis esophageal adenocarcinoma hydrocephalus juvenile dermatomyositis Malformations of Cortical Development non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia spina bifida breast cancer diabetes mellitus facioscapulohumeral muscular dystrophy intellectual disability limb-girdle muscular dystrophy malignant ependymoma nonsyndromic genetic deafness pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma Duchenne muscular dystrophy glioblastoma interstitial cystitis lung carcinoma malignant glioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.