Annotations: 5A3F

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Dynamin stalk-like	8054367	3002023	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Dynamin stalk-like	8054367	3002023	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ras-like P-loop GTPases	8054366	3002022	SCOP2B (2022-06-29)
B	SCOP2 Family	Dynamin G domain-like	8050012	4004047	SCOP2 (2022-06-29)
B	SCOP2 Family	Dynamin stalk region-like	8054365	4004048	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Ras-like P-loop GTPases	8054366	3002022	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Dynamin stalk-like	8054367	3002023	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	Dynamin stalk-like	8054367	3002023	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dynamin stalk-like	8054367	3002023	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ras-like P-loop GTPases	8054366	3002022	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Dynamin stalk-like	8054367	3002023	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ras-like P-loop GTPases	8054366	3002022	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Dynamin stalk-like	8054367	3002023	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00169	e5a3fA3	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PF00169	ECOD (1.6)
A	PF01031,PF02212	e5a3fA1	A: alpha bundles	X: Middle and GTPase effector domains in dynamin-related proteins (From Topology)	H: Middle and GTPase effector domains in dynamin-related proteins (From Topology)	T: Middle and GTPase effector domains in dynamin-related proteins	F: PF01031,PF02212	ECOD (1.6)
A	PF00350,PF01031	e5a3fA2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00350,PF01031	ECOD (1.6)
B	PF01031,PF02212	e5a3fB2	A: alpha bundles	X: Middle and GTPase effector domains in dynamin-related proteins (From Topology)	H: Middle and GTPase effector domains in dynamin-related proteins (From Topology)	T: Middle and GTPase effector domains in dynamin-related proteins	F: PF01031,PF02212	ECOD (1.6)
B	PF00350,PF01031	e5a3fB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00350,PF01031	ECOD (1.6)
C	PF00169	e5a3fC1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PF00169	ECOD (1.6)
C	PF01031,PF02212	e5a3fC3	A: alpha bundles	X: Middle and GTPase effector domains in dynamin-related proteins (From Topology)	H: Middle and GTPase effector domains in dynamin-related proteins (From Topology)	T: Middle and GTPase effector domains in dynamin-related proteins	F: PF01031,PF02212	ECOD (1.6)
C	PF00350,PF01031	e5a3fC2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00350,PF01031	ECOD (1.6)
D	PF01031,PF02212	e5a3fD1	A: alpha bundles	X: Middle and GTPase effector domains in dynamin-related proteins (From Topology)	H: Middle and GTPase effector domains in dynamin-related proteins (From Topology)	T: Middle and GTPase effector domains in dynamin-related proteins	F: PF01031,PF02212	ECOD (1.6)
D	PF00350,PF01031	e5a3fD2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00350,PF01031	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.120.1240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Dynamin, middle domain	CATH (4.3.0)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
B	1.20.120.1240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Dynamin, middle domain	CATH (4.3.0)
C	1.20.120.1240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Dynamin, middle domain	CATH (4.3.0)
C	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
D	1.20.120.1240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Dynamin, middle domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01031	Dynamin central region (Dynamin_M)	Dynamin central region	-	Family
A, B, C, D	PF00350	Dynamin family (Dynamin_N)	Dynamin family	-	Domain
A, B, C, D	PF02212	Dynamin GTPase effector domain (GED)	Dynamin GTPase effector domain	-	Family
A, B, C, D	PF00169	PH domain (PH)	PH domain	PH stands for pleckstrin homology.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	DYNAMIN 3	protein binding binding type 1 metabotropic glutamate receptor binding signaling receptor binding glutamate receptor binding G protein-coupled receptor binding G protein-coupled glutamate receptor binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding protein binding binding type 1 metabotropic glutamate receptor binding signaling receptor binding glutamate receptor binding G protein-coupled receptor binding G protein-coupled glutamate receptor binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding organic cyclic compound binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding microtubule binding tubulin binding protein serine/threonine kinase binding kinase binding enzyme binding protein kinase binding type 5 metabotropic glutamate receptor binding nitric-oxide synthase binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity identical protein binding structural constituent of postsynapse structural molecule activity structural constituent of synapse	regulation of localization cellular localization regulation of biological process transport regulation of transport positive regulation of synaptic vesicle recycling synaptic vesicle cycle biological regulation positive regulation of biological process regulation of synaptic vesicle recycling establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse synaptic vesicle recycling localization regulation of localization cellular localization regulation of biological process transport regulation of transport positive regulation of synaptic vesicle recycling synaptic vesicle cycle biological regulation positive regulation of biological process regulation of synaptic vesicle recycling establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse synaptic vesicle recycling localization positive regulation of transport establishment of localization in cell cellular process synaptic vesicle endocytosis import into cell presynaptic endocytosis endocytosis receptor internalization receptor-mediated endocytosis postsynaptic neurotransmitter receptor internalization protein-containing complex localization neurotransmitter receptor internalization regulation of postsynaptic membrane neurotransmitter receptor levels postsynaptic endocytosis regulation of biological quality multicellular organismal process regulation of cellular process cell projection organization negative regulation of biological process neuron projection development multicellular organism development cell projection morphogenesis negative regulation of dendritic spine morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development regulation of synapse structure or activity dendritic spine morphogenesis synapse organization system development developmental process dendritic spine development dendritic spine organization postsynapse organization negative regulation of cellular component organization regulation of cell projection organization regulation of postsynapse organization nervous system development generation of neurons regulation of neuron projection development regulation of cellular component organization regulation of developmental process cellular developmental process plasma membrane bounded cell projection morphogenesis cell development negative regulation of dendritic spine development regulation of dendritic spine development cell morphogenesis cellular component organization neurogenesis dendrite development negative regulation of cellular process cellular component organization or biogenesis negative regulation of cell projection organization regulation of anatomical structure morphogenesis plasma membrane bounded cell projection organization negative regulation of developmental process dendrite morphogenesis cell morphogenesis involved in neuron differentiation negative regulation of neuron projection development anatomical structure morphogenesis regulation of synapse organization cell junction organization neuron development regulation of dendritic spine morphogenesis neuron projection organization regulation of plasma membrane bounded cell projection organization cellular component biogenesis filopodium assembly cellular component assembly plasma membrane bounded cell projection assembly cell projection assembly positive regulation of cellular component organization regulation of filopodium assembly positive regulation of cell projection organization positive regulation of filopodium assembly positive regulation of cellular process positive regulation of cellular component biogenesis regulation of cell projection assembly regulation of cellular component biogenesis regulation of plasma membrane bounded cell projection assembly positive regulation of plasma membrane bounded cell projection assembly cell junction assembly synapse assembly	extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle neuron spine dendritic spine head synapse neuron projection extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle neuron spine dendritic spine head synapse neuron projection dendritic spine plasma membrane bounded cell projection somatodendritic compartment cell projection postsynapse cell junction dendrite dendritic tree cell periphery plasma membrane membrane synaptic cleft presynapse intracellular anatomical structure cytoplasm glutamatergic synapse postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse perinuclear region of cytoplasm axon postsynaptic endocytic zone membrane synaptic membrane postsynaptic endocytic zone postsynaptic membrane plasma membrane region protein-containing complex tubulobulbar complex apical tubulobulbar complex basal tubulobulbar complex polymeric cytoskeletal fiber intracellular organelle cytoskeleton intracellular non-membrane-bounded organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR020850	GTPase effector domain	Domain
A, B, C, D	IPR001849	Pleckstrin homology domain	Domain
A, B, C, D	IPR001401	Dynamin, GTPase domain	Domain
A, B, C, D	IPR045063	Dynamin, N-terminal	Domain
A, B, C, D	IPR030381	Dynamin-type guanine nucleotide-binding (G) domain	Domain
A, B, C, D	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR019762	Dynamin, GTPase region, conserved site	Conserved Site
A, B, C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D	IPR003130	Dynamin GTPase effector	Domain
A, B, C, D	IPR000375	Dynamin stalk domain	Domain
A, B, C, D	IPR022812	Dynamin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q9UQ16	osteosarcoma pilocytic astrocytoma progressive supranuclear palsy ulcerative colitis Alzheimer disease Crohn disease gastric carcinoma kidney neoplasm lung cancer malignant glioma medulloblastoma ovarian cancer pituitary cancer subependymal giant cell astrocytoma uterine corpus leiomyoma osteosarcoma pilocytic astrocytoma progressive supranuclear palsy ulcerative colitis Alzheimer disease Crohn disease gastric carcinoma kidney neoplasm lung cancer malignant glioma medulloblastoma ovarian cancer pituitary cancer subependymal giant cell astrocytoma uterine corpus leiomyoma astrocytic tumor exocrine pancreatic carcinoma glioblastoma large cell medulloblastoma lung carcinoma Malignant neoplasm of kidney non-small cell lung carcinoma Pick disease primitive neuroectodermal tumor tuberculosis atypical teratoid rhabdoid tumor gastric cancer kidney cancer lung adenocarcinoma malignant ependymoma malignant pancreatic neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.