4Y5Z | pdb_00004y5z

T=1 capsid structure of SeMV Ndel65CP fused with B-domain of S. aureus protein SpA at the N-terminus (P1 crystal form)


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd4y5zb_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Cd4y5zc_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Dd4y5zd_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Ed4y5ze_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Fd4y5zf_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Gd4y5zg_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Hd4y5zh_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Id4y5zi_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Jd4y5zj_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Kd4y5zk_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Md4y5zm_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Od4y5zo_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Pd4y5zp_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Rd4y5zr_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Sd4y5zs_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
SA [auth 0]d4y5z0_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
TA [auth 1]d4y5z1_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
UA [auth 2]d4y5z2_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Vd4y5zv_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
VA [auth 3]d4y5z3_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
WA [auth 4]d4y5z4_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
XA [auth 5]d4y5z5_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
YA [auth 6]d4y5z6_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
ZA [auth 7]d4y5z7_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Zd4y5zz_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Yd4y5zy_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Xd4y5zx_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Wd4y5zw_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Ud4y5zu_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Td4y5zt_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Qd4y5zq_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Nd4y5zn_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Ld4y5zl_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Ad4y5za_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth a]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
AB [auth b]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
BB [auth d]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
CA [auth e]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
CB [auth f]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
DA [auth g]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
DB [auth h]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
EA [auth i]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
EB [auth j]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
FB [auth l]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
GA [auth m]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
GB [auth n]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
HA [auth o]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
IA [auth q]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
KA [auth s]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
LA [auth t]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
MA [auth u]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
PA [auth x]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
QA [auth y]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
RA [auth z]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
OA [auth w]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
NA [auth v]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
JA [auth r]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
HB [auth p]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
FA [auth k]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
BA [auth c]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AA [auth a]Viral_coate4y5za1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
AB [auth b]Viral_coate4y5zb1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
BViral_coate4y5zB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
BB [auth d]Viral_coate4y5zd1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
CViral_coate4y5zC1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
CA [auth e]Viral_coate4y5ze1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
CB [auth f]Viral_coate4y5zf1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
DViral_coate4y5zD1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
DA [auth g]Viral_coate4y5zg1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
DB [auth h]Viral_coate4y5zh1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
EViral_coate4y5zE1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
EA [auth i]Viral_coate4y5zi1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
EB [auth j]Viral_coate4y5zj1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
FViral_coate4y5zF1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
FB [auth l]Viral_coate4y5zl1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
GViral_coate4y5zG1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
GA [auth m]Viral_coate4y5zm1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
GB [auth n]Viral_coate4y5zn1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
HViral_coate4y5zH1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
HA [auth o]Viral_coate4y5zo1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
IViral_coate4y5zI1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
IA [auth q]Viral_coate4y5zq1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
JViral_coate4y5zJ1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
KViral_coate4y5zK1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
KA [auth s]Viral_coate4y5zs1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
LA [auth t]Viral_coate4y5zt1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
MViral_coate4y5zM1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
MA [auth u]Viral_coate4y5zu1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
OViral_coate4y5zO1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
PViral_coate4y5zP1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
PA [auth x]Viral_coate4y5zx1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
QA [auth y]Viral_coate4y5zy1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
RViral_coate4y5zR1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
SViral_coate4y5zS1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
SA [auth 0]Viral_coate4y5z01 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
TA [auth 1]Viral_coate4y5z11 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
UA [auth 2]Viral_coate4y5z21 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
VViral_coate4y5zV1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
VA [auth 3]Viral_coate4y5z31 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
WA [auth 4]Viral_coate4y5z41 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
XA [auth 5]Viral_coate4y5z51 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
YA [auth 6]Viral_coate4y5z61 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
ZA [auth 7]Viral_coate4y5z71 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
ZViral_coate4y5zZ1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
YViral_coate4y5zY1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
XViral_coate4y5zX1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
WViral_coate4y5zW1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
UViral_coate4y5zU1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
TViral_coate4y5zT1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
RA [auth z]Viral_coate4y5zz1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
QViral_coate4y5zQ1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
OA [auth w]Viral_coate4y5zw1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
NA [auth v]Viral_coate4y5zv1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
NViral_coate4y5zN1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
LViral_coate4y5zL1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
JA [auth r]Viral_coate4y5zr1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
HB [auth p]Viral_coate4y5zp1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
FA [auth k]Viral_coate4y5zk1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
BA [auth c]Viral_coate4y5zc1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
AViral_coate4y5zA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
AA [auth a]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
AB [auth b]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
B2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
BB [auth d]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
CA [auth e]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
CB [auth f]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
DA [auth g]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
DB [auth h]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
E2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
EA [auth i]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
EB [auth j]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
F2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
FB [auth l]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
G2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
GA [auth m]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
GB [auth n]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
H2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
HA [auth o]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
I2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
IA [auth q]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
J2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
K2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
KA [auth s]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
LA [auth t]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
M2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
MA [auth u]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
O2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
P2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
PA [auth x]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
QA [auth y]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
R2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
S2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
SA [auth 0]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
TA [auth 1]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
UA [auth 2]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
V2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
VA [auth 3]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
WA [auth 4]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
XA [auth 5]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
YA [auth 6]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
ZA [auth 7]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
Z2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
Y2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
X2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
W2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
U2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
T2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
RA [auth z]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
Q2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
OA [auth w]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
NA [auth v]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
N2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
L2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
JA [auth r]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
HB [auth p]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
FA [auth k]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
BA [auth c]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
A2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR009063Immunoglobulin/albumin-binding domain superfamilyHomologous Superfamily
IPR005877YSIRK Gram-positive signal peptideDomain
IPR036779LysM domain superfamilyHomologous Superfamily
IPR005038Octapeptide repeatRepeat
IPR003132Protein A, Ig-binding domainDomain
IPR018392LysM domainDomain
IPR019931LPXTG cell wall anchor motifConserved Site
IPR009063Immunoglobulin/albumin-binding domain superfamilyHomologous Superfamily
IPR005877YSIRK Gram-positive signal peptideDomain
IPR036779LysM domain superfamilyHomologous Superfamily
IPR005038Octapeptide repeatRepeat
IPR003132Protein A, Ig-binding domainDomain
IPR018392LysM domainDomain
IPR019931LPXTG cell wall anchor motifConserved Site
IPR029053Viral coat protein subunitHomologous Superfamily
IPR000937Icosahedral viral capsid protein, S domainDomain