4Y5Z | pdb_00004y5z

T=1 capsid structure of SeMV Ndel65CP fused with B-domain of S. aureus protein SpA at the N-terminus (P1 crystal form)


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4y5za_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Bd4y5zb_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Cd4y5zc_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Dd4y5zd_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Ed4y5ze_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Fd4y5zf_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Gd4y5zg_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Hd4y5zh_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Id4y5zi_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Jd4y5zj_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Kd4y5zk_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Ld4y5zl_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Md4y5zm_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Nd4y5zn_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Od4y5zo_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Pd4y5zp_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Qd4y5zq_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Rd4y5zr_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Sd4y5zs_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
SA [auth 0]d4y5z0_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Td4y5zt_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
TA [auth 1]d4y5z1_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Ud4y5zu_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
UA [auth 2]d4y5z2_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Vd4y5zv_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
VA [auth 3]d4y5z3_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Wd4y5zw_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Xd4y5zx_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
XA [auth 5]d4y5z5_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
YA [auth 6]d4y5z6_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
ZA [auth 7]d4y5z7_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Zd4y5zz_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
Yd4y5zy_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)
WA [auth 4]d4y5z4_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Tombusviridae-like VP automated matches (Staphylococcus aureus subsp. aureus NCTC 8325 ) [TaxId: 93061 ], (Sesbania mosaic virus ) [TaxId: 12558 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth a]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
BA [auth c]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
BB [auth d]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
CB [auth f]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
DA [auth g]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
DB [auth h]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
EA [auth i]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
EB [auth j]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
FA [auth k]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
FB [auth l]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
GA [auth m]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
GB [auth n]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
HA [auth o]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
HB [auth p]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
IA [auth q]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
JA [auth r]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
KA [auth s]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
LA [auth t]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
MA [auth u]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
NA [auth v]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
PA [auth x]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
QA [auth y]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
RA [auth z]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
OA [auth w]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
CA [auth e]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)
AB [auth b]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8040784 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AViral_coate4y5zA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
AA [auth a]Viral_coate4y5za1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
BViral_coate4y5zB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
BA [auth c]Viral_coate4y5zc1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
BB [auth d]Viral_coate4y5zd1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
CViral_coate4y5zC1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
CB [auth f]Viral_coate4y5zf1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
DViral_coate4y5zD1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
DA [auth g]Viral_coate4y5zg1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
DB [auth h]Viral_coate4y5zh1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
EViral_coate4y5zE1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
EA [auth i]Viral_coate4y5zi1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
EB [auth j]Viral_coate4y5zj1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
FViral_coate4y5zF1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
FA [auth k]Viral_coate4y5zk1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
FB [auth l]Viral_coate4y5zl1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
GViral_coate4y5zG1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
GA [auth m]Viral_coate4y5zm1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
GB [auth n]Viral_coate4y5zn1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
HViral_coate4y5zH1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
HA [auth o]Viral_coate4y5zo1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
HB [auth p]Viral_coate4y5zp1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
IViral_coate4y5zI1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
IA [auth q]Viral_coate4y5zq1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
JViral_coate4y5zJ1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
JA [auth r]Viral_coate4y5zr1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
KViral_coate4y5zK1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
KA [auth s]Viral_coate4y5zs1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
LViral_coate4y5zL1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
LA [auth t]Viral_coate4y5zt1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
MViral_coate4y5zM1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
MA [auth u]Viral_coate4y5zu1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
NViral_coate4y5zN1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
NA [auth v]Viral_coate4y5zv1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
OViral_coate4y5zO1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
PViral_coate4y5zP1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
PA [auth x]Viral_coate4y5zx1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
QViral_coate4y5zQ1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
QA [auth y]Viral_coate4y5zy1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
RViral_coate4y5zR1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
RA [auth z]Viral_coate4y5zz1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
SViral_coate4y5zS1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
SA [auth 0]Viral_coate4y5z01 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
TViral_coate4y5zT1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
TA [auth 1]Viral_coate4y5z11 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
UViral_coate4y5zU1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
UA [auth 2]Viral_coate4y5z21 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
VViral_coate4y5zV1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
VA [auth 3]Viral_coate4y5z31 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
WViral_coate4y5zW1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
XViral_coate4y5zX1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
XA [auth 5]Viral_coate4y5z51 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
YA [auth 6]Viral_coate4y5z61 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
ZA [auth 7]Viral_coate4y5z71 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
ZViral_coate4y5zZ1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
YViral_coate4y5zY1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
WA [auth 4]Viral_coate4y5z41 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
OA [auth w]Viral_coate4y5zw1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
CA [auth e]Viral_coate4y5ze1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)
AB [auth b]Viral_coate4y5zb1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Viral_coatECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
AA [auth a]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
B2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
BA [auth c]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
BB [auth d]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
CB [auth f]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
DA [auth g]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
DB [auth h]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
E2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
EA [auth i]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
EB [auth j]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
F2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
FA [auth k]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
FB [auth l]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
G2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
GA [auth m]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
GB [auth n]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
H2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
HA [auth o]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
HB [auth p]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
I2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
IA [auth q]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
J2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
JA [auth r]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
K2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
KA [auth s]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
L2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
LA [auth t]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
M2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
MA [auth u]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
N2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
NA [auth v]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
O2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
P2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
PA [auth x]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
Q2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
QA [auth y]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
R2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
RA [auth z]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
S2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
SA [auth 0]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
T2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
TA [auth 1]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
U2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
UA [auth 2]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
V2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
VA [auth 3]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
W2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
X2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
XA [auth 5]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
YA [auth 6]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
ZA [auth 7]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
Z2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
Y2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
WA [auth 4]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
OA [auth w]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
CA [auth e]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
AB [auth b]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR009063Immunoglobulin/albumin-binding domain superfamilyHomologous Superfamily
IPR005877YSIRK Gram-positive signal peptideDomain
IPR036779LysM domain superfamilyHomologous Superfamily
IPR005038Octapeptide repeatRepeat
IPR003132Protein A, Ig-binding domainDomain
IPR018392LysM domainDomain
IPR019931LPXTG cell wall anchor domainDomain
IPR009063Immunoglobulin/albumin-binding domain superfamilyHomologous Superfamily
IPR005877YSIRK Gram-positive signal peptideDomain
IPR036779LysM domain superfamilyHomologous Superfamily
IPR005038Octapeptide repeatRepeat
IPR003132Protein A, Ig-binding domainDomain
IPR018392LysM domainDomain
IPR019931LPXTG cell wall anchor domainDomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR000937Icosahedral viral capsid protein, S domainDomain