4X33 | pdb_00004x33

Structure of the Elongator cofactor complex Kti11/Kti13 at 1.45A

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Cas_Cas5d	e4x33B1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)
A	Cas_Cas5d	e4x33A1	A: a/b three-layered sandwiches	X: Formyltransferase	H: Formyltransferase	T: Formyltransferase	F: Cas_Cas5d	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.660.10	Alpha Beta	Roll	Microbial ribonuclease fold	DPH Zinc finger	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF13540	Regulator of chromosome condensation (RCC1) repeat (RCC1_2)	Regulator of chromosome condensation (RCC1) repeat	-	Repeat
A	PF05207	CSL zinc finger (Zn_ribbon_CSL)	CSL zinc finger	This is a zinc binding motif which contains four cysteine residues which chelate zinc [1]. This domain is often found associated with a Pfam:PF00226 domain. This domain is named after the conserved motif of the final cysteine.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Protein ATS1	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity	catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein ubiquitination macromolecule modification post-translational protein modification catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal peptidyl-histidine modification peptidyl-amino acid modification protein histidyl modification to diphthamide tRNA modification RNA metabolic process tRNA wobble uridine modification gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process RNA modification biosynthetic process tRNA processing tRNA wobble base modification RNA processing	cellular anatomical structure intracellular anatomical structure cytoplasm
A	Diphthamide biosynthesis protein 3	oxidoreductase activity oxidoreductase activity, acting on iron-sulfur proteins as donors catalytic activity 2-(3-amino-3-carboxypropyl)histidine synthase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on iron-sulfur proteins as donors catalytic activity 2-(3-amino-3-carboxypropyl)histidine synthase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding metallochaperone activity iron chaperone activity molecular carrier activity zinc ion binding	tRNA modification RNA metabolic process primary metabolic process tRNA wobble uridine modification gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process RNA modification biosynthetic process tRNA processing tRNA modification RNA metabolic process primary metabolic process tRNA wobble uridine modification gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process RNA modification biosynthetic process tRNA processing macromolecule modification tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation tRNA wobble base modification metabolic process cellular process macromolecule metabolic process RNA processing peptidyl-histidine modification peptidyl-amino acid modification protein metabolic process protein modification process protein histidyl modification to diphthamide	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR000408	Regulator of chromosome condensation, RCC1	Repeat
B	IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Homologous Superfamily
B	IPR051553	Ran GTPase-activating	Family
A	IPR007872	DPH-type metal-binding domain	Domain
A	IPR044248	Diphthamide biosynthesis protein 3/4-like	Family
A	IPR036671	DPH-type metal-binding domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	CSO	Parent Component: CYS RESID: AA0205 PSI-MOD : L-cysteine sulfenic acid MOD:00210

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.