4WAV | pdb_00004wav

Crystal Structure of Haloquadratum walsbyi bacteriorhodopsin mutant D93N

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4wava_ Membrane and cell surface proteins and peptides Class A G protein-coupled receptor (GPCR)-like Class A G protein-coupled receptor (GPCR)-like automated matches automated matches (Haloquadratum walsbyi C23 ) [TaxId: 768065 ], SCOPe (2.08)
Bd4wavb_ Membrane and cell surface proteins and peptides Class A G protein-coupled receptor (GPCR)-like Class A G protein-coupled receptor (GPCR)-like automated matches automated matches (Haloquadratum walsbyi C23 ) [TaxId: 768065 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyBacteriorhodopsin-like 8071307 4001859 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyG protein-coupled receptor-like 8071308 3000473 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyG protein-coupled receptor-like 8071308 3000473 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASH2e4wavA1 A: alpha bundlesX: Cysteine proteinases-likeH: Piezo CTL2 domainT: Piezo CTL2 domainF: SH2ECOD (develop294)
BSH2e4wavB1 A: alpha bundlesX: Cysteine proteinases-likeH: Piezo CTL2 domainT: Piezo CTL2 domainF: SH2ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.1070.10 Mainly Alpha Up-down Bundle Rhopdopsin 7-helix transmembrane proteins Rhodopsin 7-helix transmembrane proteinsCATH (4.3.0)
B1.20.1070.10 Mainly Alpha Up-down Bundle Rhopdopsin 7-helix transmembrane proteins Rhodopsin 7-helix transmembrane proteinsCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Bacteriorhodopsin-I

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR018229Rhodopsin, retinal binding siteBinding Site
A, B
IPR001425Archaeal/bacterial/fungal rhodopsinsFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B
OPMTransmembraneAlpha-helical polytopicRhodopsin-like receptors and pumpsMicrobial and algal rhodopsins

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B
MemProtMDAnnotated as membrane protein by MemProtMD