4V9E | pdb_00004v9e

Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer Bound to Single-stranded RNA.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth BE]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
Y [auth BD]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
X [auth BC]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
W [auth BB]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
V [auth BA]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
R [auth AR]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
Q [auth AQ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
P [auth AP]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
O [auth AO]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
N [auth AN]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
MA [auth BR]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
M [auth AM]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
LA [auth BQ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
L [auth AL]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
KA [auth BP]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
K [auth AK]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
JA [auth BO]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
J [auth AJ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
IA [auth BN]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
I [auth AI]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
HA [auth BM]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
H [auth AH]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
GA [auth BL]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
G [auth AG]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
FA [auth BK]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
F [auth AF]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
EA [auth BJ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
E [auth AE]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
DA [auth BI]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
D [auth AD]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
CA [auth BH]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
C [auth AC]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
BA [auth BG]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
B [auth AB]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
AA [auth BF]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
A [auth AA]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth BE]	TTL, ATPgrasp_YheCD	e4v9eBE1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
Y [auth BD]	TTL, ATPgrasp_YheCD	e4v9eBD1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
X [auth BC]	TTL, ATPgrasp_YheCD	e4v9eBC1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
W [auth BB]	TTL, ATPgrasp_YheCD	e4v9eBB1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
V [auth BA]	TTL, ATPgrasp_YheCD	e4v9eBA1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
R [auth AR]	TTL, ATPgrasp_YheCD	e4v9eAR1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
Q [auth AQ]	TTL, ATPgrasp_YheCD	e4v9eAQ1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
P [auth AP]	TTL, ATPgrasp_YheCD	e4v9eAP1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
O [auth AO]	TTL, ATPgrasp_YheCD	e4v9eAO1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
N [auth AN]	TTL, ATPgrasp_YheCD	e4v9eAN1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
MA [auth BR]	TTL, ATPgrasp_YheCD	e4v9eBR1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
M [auth AM]	TTL, ATPgrasp_YheCD	e4v9eAM1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
LA [auth BQ]	TTL, ATPgrasp_YheCD	e4v9eBQ1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
L [auth AL]	TTL, ATPgrasp_YheCD	e4v9eAL1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
KA [auth BP]	TTL, ATPgrasp_YheCD	e4v9eBP1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
K [auth AK]	TTL, ATPgrasp_YheCD	e4v9eAK1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
JA [auth BO]	TTL, ATPgrasp_YheCD	e4v9eBO1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
J [auth AJ]	TTL, ATPgrasp_YheCD	e4v9eAJ1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
IA [auth BN]	TTL, ATPgrasp_YheCD	e4v9eBN1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
I [auth AI]	TTL, ATPgrasp_YheCD	e4v9eAI1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
HA [auth BM]	TTL, ATPgrasp_YheCD	e4v9eBM1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
H [auth AH]	TTL, ATPgrasp_YheCD	e4v9eAH1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
GA [auth BL]	TTL, ATPgrasp_YheCD	e4v9eBL1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
G [auth AG]	TTL, ATPgrasp_YheCD	e4v9eAG1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
FA [auth BK]	TTL, ATPgrasp_YheCD	e4v9eBK1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
F [auth AF]	TTL, ATPgrasp_YheCD	e4v9eAF1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
EA [auth BJ]	TTL, ATPgrasp_YheCD	e4v9eBJ1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
E [auth AE]	TTL, ATPgrasp_YheCD	e4v9eAE1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
DA [auth BI]	TTL, ATPgrasp_YheCD	e4v9eBI1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
D [auth AD]	TTL, ATPgrasp_YheCD	e4v9eAD1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
CA [auth BH]	TTL, ATPgrasp_YheCD	e4v9eBH1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
C [auth AC]	TTL, ATPgrasp_YheCD	e4v9eAC1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
BA [auth BG]	TTL, ATPgrasp_YheCD	e4v9eBG1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
B [auth AB]	TTL, ATPgrasp_YheCD	e4v9eAB1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
AA [auth BF]	TTL, ATPgrasp_YheCD	e4v9eBF1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)
A [auth AA]	TTL, ATPgrasp_YheCD	e4v9eAA1	A: a/b three-layered sandwiches	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: TTL, ATPgrasp_YheCD	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
NA [auth Ba], OA [auth Bg], PA [auth Bm], S [auth Aa], T [auth Ag], NA [auth Ba], OA [auth Bg], PA [auth Bm], S [auth Aa], T [auth Ag], U [auth Am]	35-mer poly(U) RNA	-	-	-
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	Nucleocapsid protein	RNA binding binding nucleic acid binding identical protein binding protein binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	IPR015971	Nucleocapsid, Phlebovirus	Family
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family