4V9E

Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Hexamer Bound to Single-stranded RNA.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth AA]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
AA [auth BF]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
B [auth AB]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
BA [auth BG]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
C [auth AC]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
CA [auth BH]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
D [auth AD]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
DA [auth BI]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
E [auth AE]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
EA [auth BJ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
F [auth AF]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
FA [auth BK]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
G [auth AG]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
GA [auth BL]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
H [auth AH]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
HA [auth BM]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
I [auth AI]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
IA [auth BN]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
J [auth AJ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
JA [auth BO]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
K [auth AK]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
KA [auth BP]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
L [auth AL]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
LA [auth BQ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
M [auth AM]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
MA [auth BR]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
N [auth AN]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
O [auth AO]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
P [auth AP]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
Q [auth AQ]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
R [auth AR]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
V [auth BA]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
W [auth BB]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
X [auth BC]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
Y [auth BD]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
Z [auth BE]	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth AA]	PF05733	e4v9eAA1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
AA [auth BF]	PF05733	e4v9eBF1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
B [auth AB]	PF05733	e4v9eAB1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
BA [auth BG]	PF05733	e4v9eBG1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
C [auth AC]	PF05733	e4v9eAC1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
CA [auth BH]	PF05733	e4v9eBH1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
D [auth AD]	PF05733	e4v9eAD1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
DA [auth BI]	PF05733	e4v9eBI1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
E [auth AE]	PF05733	e4v9eAE1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
EA [auth BJ]	PF05733	e4v9eBJ1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
F [auth AF]	PF05733	e4v9eAF1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
FA [auth BK]	PF05733	e4v9eBK1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
G [auth AG]	PF05733	e4v9eAG1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
GA [auth BL]	PF05733	e4v9eBL1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
H [auth AH]	PF05733	e4v9eAH1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
HA [auth BM]	PF05733	e4v9eBM1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
I [auth AI]	PF05733	e4v9eAI1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
IA [auth BN]	PF05733	e4v9eBN1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
J [auth AJ]	PF05733	e4v9eAJ1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
JA [auth BO]	PF05733	e4v9eBO1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
K [auth AK]	PF05733	e4v9eAK1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
KA [auth BP]	PF05733	e4v9eBP1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
L [auth AL]	PF05733	e4v9eAL1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
LA [auth BQ]	PF05733	e4v9eBQ1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
M [auth AM]	PF05733	e4v9eAM1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
MA [auth BR]	PF05733	e4v9eBR1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
N [auth AN]	PF05733	e4v9eAN1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
O [auth AO]	PF05733	e4v9eAO1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
P [auth AP]	PF05733	e4v9eAP1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
Q [auth AQ]	PF05733	e4v9eAQ1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
R [auth AR]	PF05733	e4v9eAR1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
V [auth BA]	PF05733	e4v9eBA1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
W [auth BB]	PF05733	e4v9eBB1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
X [auth BC]	PF05733	e4v9eBC1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
Y [auth BD]	PF05733	e4v9eBD1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)
Z [auth BE]	PF05733	e4v9eBE1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: PF05733	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	PF05733	Tenuivirus/Phlebovirus nucleocapsid protein (Tenui_N)	Tenuivirus/Phlebovirus nucleocapsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	Nucleocapsid protein	RNA binding binding organic cyclic compound binding nucleic acid binding identical protein binding protein binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part protein-containing complex ribonucleoprotein complex viral nucleocapsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus
NA [auth Ba], OA [auth Bg], PA [auth Bm], S [auth Aa], T [auth Ag], NA [auth Ba], OA [auth Bg], PA [auth Bm], S [auth Aa], T [auth Ag], U [auth Am]	35-mer poly(U) RNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	IPR015971	Nucleocapsid, Phlebovirus	Family
A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], A [auth AA], AA [auth BF], B [auth AB], BA [auth BG], C [auth AC], CA [auth BH], D [auth AD], DA [auth BI], E [auth AE], EA [auth BJ], F [auth AF], FA [auth BK], G [auth AG], GA [auth BL], H [auth AH], HA [auth BM], I [auth AI], IA [auth BN], J [auth AJ], JA [auth BO], K [auth AK], KA [auth BP], L [auth AL], LA [auth BQ], M [auth AM], MA [auth BR], N [auth AN], O [auth AO], P [auth AP], Q [auth AQ], R [auth AR], V [auth BA], W [auth BB], X [auth BC], Y [auth BD], Z [auth BE]	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family