Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| K [auth AH] | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2022-06-29) |
| I [auth AF] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
| G [auth AD] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2022-06-29) |
| ZA [auth B1] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
| XA [auth BX] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2022-06-29) |
| WA [auth BW] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2022-06-29) |
| VA [auth BU] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
| UA [auth BT] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
| TA [auth BS] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
| SA [auth BR] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| RA [auth BQ] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2022-06-29) |
| QA [auth BO] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
| PA [auth BN] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
| OA [auth BM] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2022-06-29) |
| NA [auth BL] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| MA [auth BK] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2022-06-29) |
| LA [auth BJ] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2022-06-29) |
| KA [auth BI] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| JA [auth BH] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2022-06-29) |
| IA [auth BG] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2B (2022-06-29) |
| IA [auth BG] | SCOP2B Superfamily | Ribosomal protein L11, C-terminal domain | 8032961 | 3001186 | SCOP2B (2022-06-29) |
| HA [auth BF] | SCOP2B Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2B (2022-06-29) |
| HA [auth BF] | SCOP2B Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2B (2022-06-29) |
| GA [auth BE] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
| GA [auth BE] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
| E [auth AB] | SCOP2 Family | Ribosomal protein S2-like | 8063837 | 4003744 | SCOP2 (2022-06-29) |
| E [auth AB] | SCOP2 Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2 (2022-06-29) |
| FA [auth BD] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2022-06-29) |
| EA [auth BC] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
| DA [auth BB] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2022-06-29) |
| CA [auth BA] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
| CA [auth BA] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
| BA [auth B5] | SCOP2B Superfamily | Ribosomal protein L7/12, oligomerisation (N-terminal) domain | 8042101 | 3001092 | SCOP2B (2022-06-29) |
| AA [auth B3] | SCOP2B Superfamily | Ribosomal protein L7/12, oligomerisation (N-terminal) domain | 8042101 | 3001092 | SCOP2B (2022-06-29) |
| Z [auth B2] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8065348 | 3001911 | SCOP2B (2022-06-29) |
| V [auth AS] | SCOP2B Superfamily | Ribosomal protein S19 | 8103915 | 3000686 | SCOP2B (2022-06-29) |
| T [auth AQ] | SCOP2 Family | Cold shock DNA-binding domain-like | 8059275 | 4001909 | SCOP2 (2022-06-29) |
| T [auth AQ] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2 (2022-06-29) |
| S [auth AP] | SCOP2B Superfamily | Ribosomal protein S16 | 8106547 | 3000680 | SCOP2B (2022-06-29) |
| R [auth AO] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8032375 | 3001284 | SCOP2B (2022-06-29) |
| P [auth AM] | SCOP2B Superfamily | S13-like H2TH domain | 8098358 | 3000053 | SCOP2B (2022-06-29) |
| O [auth AL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8106545 | 3000135 | SCOP2B (2022-06-29) |
| N [auth AK] | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2022-06-29) |
| M [auth AJ] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2022-06-29) |
| L [auth AI] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082661 | 3000100 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| K [auth AH] | TTL, ATPgrasp_YheCD | e4v4vAH1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| J [auth AG] | TTL, ATPgrasp_YheCD | e4v4vAG1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| I [auth AF] | TTL, ATPgrasp_YheCD | e4v4vAF1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| H [auth AE] | TTL, ATPgrasp_YheCD | e4v4vAE1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| G [auth AD] | FecCD | e4v4vAD1 | A: a/b three-layered sandwiches | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: FecCD | ECOD (v294.1) |
| ZA [auth B1] | PemK_toxin | e4v4vB11 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| YA [auth BZ] | Multi_Drug_Res | e4v4vBZ1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Multi_Drug_Res | ECOD (v294.1) |
| XA [auth BX] | TTL, ATPgrasp_YheCD | e4v4vBX1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| WA [auth BW] | TTL, ATPgrasp_YheCD | e4v4vBW1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| VA [auth BU] | TTL, ATPgrasp_YheCD | e4v4vBU1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| UA [auth BT] | TTL, ATPgrasp_YheCD | e4v4vBT1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| TA [auth BS] | TTL, ATPgrasp_YheCD | e4v4vBS1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| SA [auth BR] | TTL, ATPgrasp_YheCD | e4v4vBR1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| RA [auth BQ] | TTL, ATPgrasp_YheCD | e4v4vBQ1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| QA [auth BO] | PemK_toxin | e4v4vBO1 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| F [auth AC] | TTL, ATPgrasp_YheCD | e4v4vAC1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| PA [auth BN] | Ribosomal_L19 | e4v4vBN1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| OA [auth BM] | PemK_toxin | e4v4vBM1 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| NA [auth BL] | TTL, ATPgrasp_YheCD | e4v4vBL1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| MA [auth BK] | Ribosomal_L19 | e4v4vBK1 | A: a/b three-layered sandwiches | X: MocoBD/DmpA-related | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.1) |
| LA [auth BJ] | PemK_toxin | e4v4vBJ1 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| KA [auth BI] | TTL, ATPgrasp_YheCD | e4v4vBI1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| JA [auth BH] | TTL, ATPgrasp_YheCD | e4v4vBH1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| IA [auth BG] | TTL, ATPgrasp_YheCD | e4v4vBG1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| HA [auth BF] | TTL, ATPgrasp_YheCD | e4v4vBF2 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| HA [auth BF] | PemK_toxin | e4v4vBF3 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| GA [auth BE] | TTL, ATPgrasp_YheCD | e4v4vBE1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| E [auth AB] | DUF4847 | e4v4vAB1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: DUF4847 | ECOD (v294.1) |
| FA [auth BD] | TTL, ATPgrasp_YheCD | e4v4vBD1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| EA [auth BC] | TTL, ATPgrasp_YheCD | e4v4vBC1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| DA [auth BB] | PemK_toxin | e4v4vBB1 | A: a/b three-layered sandwiches | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.1) |
| CA [auth BA] | TTL, ATPgrasp_YheCD | e4v4vBA1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| BA [auth B5] | TTL, ATPgrasp_YheCD | e4v4vB51 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| AA [auth B3] | TTL, ATPgrasp_YheCD | e4v4vB31 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| Z [auth B2] | TTL, ATPgrasp_YheCD | e4v4vB21 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| W [auth AT] | TTL, ATPgrasp_YheCD | e4v4vAT1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| V [auth AS] | DUF4847 | e4v4vAS1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: DUF4847 | ECOD (v294.1) |
| U [auth AR] | TTL, ATPgrasp_YheCD | e4v4vAR1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| T [auth AQ] | DUF4847 | e4v4vAQ1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: DUF4847 | ECOD (v294.1) |
| S [auth AP] | TTL, ATPgrasp_YheCD | e4v4vAP1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| R [auth AO] | TTL, ATPgrasp_YheCD | e4v4vAO1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| Q [auth AN] | TTL, ATPgrasp_YheCD | e4v4vAN1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| P [auth AM] | DUF4847 | e4v4vAM1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: DUF4847 | ECOD (v294.1) |
| O [auth AL] | TTL, ATPgrasp_YheCD | e4v4vAL1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| N [auth AK] | TTL, ATPgrasp_YheCD | e4v4vAK1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| M [auth AJ] | TTL, ATPgrasp_YheCD | e4v4vAJ1 | A: a/b three-layered sandwiches | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.1) |
| L [auth AI] | FlaF_Ig-like | e4v4vAI1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| K [auth AH] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| J [auth AG] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| I [auth AF] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| H [auth AE] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| H [auth AE] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| G [auth AD] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| G [auth AD] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| ZA [auth B1] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| YA [auth BZ] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| XA [auth BX] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| WA [auth BW] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| VA [auth BU] | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |
| UA [auth BT] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| TA [auth BS] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| TA [auth BS] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| SA [auth BR] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| RA [auth BQ] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| QA [auth BO] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| F [auth AC] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| F [auth AC] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| PA [auth BN] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| OA [auth BM] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| NA [auth BL] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| MA [auth BK] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| LA [auth BJ] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| KA [auth BI] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| JA [auth BH] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| IA [auth BG] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| IA [auth BG] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| HA [auth BF] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
| HA [auth BF] | PF03948 | Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) | Ribosomal protein L9, C-terminal domain | Domain | |
| GA [auth BE] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| E [auth AB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| FA [auth BD] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| FA [auth BD] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| EA [auth BC] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| DA [auth BB] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| CA [auth BA] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| CA [auth BA] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| AA [auth B3], BA [auth B5] | PF16320 | Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N) | Ribosomal protein L7/L12 dimerisation domain | This is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1]. | Domain |
| AA [auth B3], BA [auth B5] | PF00542 | Ribosomal protein L7/L12 C-terminal domain (Ribosomal_L12) | Ribosomal protein L7/L12 C-terminal domain | Domain | |
| Z [auth B2] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
| W [auth AT] | PF01649 | Ribosomal protein S20 (Ribosomal_S20p) | Ribosomal protein S20 | - | Family |
| V [auth AS] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| U [auth AR] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| T [auth AQ] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| S [auth AP] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| R [auth AO] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| Q [auth AN] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| P [auth AM] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| O [auth AL] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| N [auth AK] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| M [auth AJ] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| L [auth AI] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |














