Coevolution of the ATPase ClpV, the TssB-TssC Sheath and the Accessory HsiE Protein Distinguishes Two Type VI Secretion Classes
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Rhv | e4uqzA1 | A: beta barrels | X: Insertion subdomain in DsbA-like | H: Insertion subdomain in DsbA-like | T: Insertion subdomain in DsbA-like | F: Rhv | ECOD (v294.2) |
| B | polyprenyl_synt | e4uqzB01 | A: beta barrels | X: Voltage-gated ion channels | H: Voltage-gated ion channels | T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | F: polyprenyl_synt | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF14559 | Tetratricopeptide repeat (TPR_19) | Tetratricopeptide repeat | - | Repeat | |
| PF07024 | ImpE protein (ImpE) | ImpE protein | - | Family | |
| PF05591 | Type VI secretion system, VipA, VC_A0107 or Hcp2 (T6SS_VipA) | Type VI secretion system, VipA, VC_A0107 or Hcp2 | - | Family |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
| IPR009211 | Type VI secretion system accessory component TagJ | Family | |
| IPR008312 | Type VI secretion system sheath protein TssB1 | Family |
