Crystal structure of the Clostridium histolyticum colH collagenase polycystic kidney disease-like domain 2a at 1.76 Angstrom resolution
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | SLT | e4u6tD1 | A: a/b three-layered sandwiches | X: Alpha-beta plaits | H: Protease propeptides/inhibitors | T: Protease propeptides/inhibitors | F: SLT | ECOD (v294.1) |
| C | Rv2632c-like | e4u6tC1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: DHS-like NAD/FAD-binding domain | F: Rv2632c-like | ECOD (v294.1) |
| B | Flavodoxin_2 | e4u6tB1 | A: a/b three-layered sandwiches | X: Anticodon-binding domain of Class II aaRS | H: Anticodon-binding domain of Class II aaRS | T: Anticodon-binding domain of Class II aaRS | F: Flavodoxin_2 | ECOD (v294.1) |
| A | DNA_pol_A | e4u6tA1 | A: a/b three-layered sandwiches | X: Anticodon-binding domain of Class II aaRS | H: Anticodon-binding domain of Class II aaRS | T: Anticodon-binding domain of Class II aaRS | F: DNA_pol_A | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR022409 | PKD/Chitinase domain | Domain | |
| IPR000601 | PKD domain | Domain | |
| IPR013661 | Peptidase M9, collagenase, N-terminal domain | Domain | |
| IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
| IPR035986 | PKD domain superfamily | Homologous Superfamily | |
| IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
| IPR041379 | Collagenase ColG-like, catalytic helper subdomain | Domain | |
| IPR007280 | Peptidase, C-terminal, archaeal/bacterial | Domain | |
| IPR002169 | Peptidase M9A/M9B, collagenase, bacterial | Family |














