4S37 | pdb_00004s37

Crystal structure of R2 pyocin membrane-piercing spike

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Phage fibre proteins	8095955	3000351	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	Phage_base_V	e4s37I1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
I	gpV	e4s37I2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
R	Phage_base_V	e4s37R2	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
R	gpV	e4s37R1	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
Q	Phage_base_V	e4s37Q1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
Q	gpV	e4s37Q2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
P	Phage_base_V	e4s37P1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
P	gpV	e4s37P2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
O	Phage_base_V	e4s37O2	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
O	gpV	e4s37O1	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
N	Phage_base_V	e4s37N1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
N	gpV	e4s37N2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
M	Phage_base_V	e4s37M1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
M	gpV	e4s37M2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
L	Phage_base_V	e4s37L2	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
L	gpV	e4s37L1	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
K	Phage_base_V	e4s37K1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
K	gpV	e4s37K2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
J	Phage_base_V	e4s37J2	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
J	gpV	e4s37J1	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
H	Phage_base_V	e4s37H1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
H	gpV	e4s37H2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
G	Phage_base_V	e4s37G1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
G	gpV	e4s37G2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
F	Phage_base_V	e4s37F1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
F	gpV	e4s37F2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
E	Phage_base_V	e4s37E1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
E	gpV	e4s37E2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
D	Phage_base_V	e4s37D1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
D	gpV	e4s37D2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
C	Phage_base_V	e4s37C1	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
C	gpV	e4s37C2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
B	Phage_base_V	e4s37B2	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
B	gpV	e4s37B1	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)
A	Phage_base_V	e4s37A2	A: beta barrels	X: OB-fold	H: Tail-associated lysozyme gp5-N (From Topology)	T: Tail-associated lysozyme gp5-N	F: Phage_base_V	ECOD (1.6)
A	gpV	e4s37A1	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: gpV	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	Phage baseplate protein	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR054122	Gp138-like, beta-helical trimerization domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR006531	Gp5/Type VI secretion system Vgr protein, OB-fold domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR013046	Phage baseplate assembly protein V/Gp45	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR037026	Vgr protein, OB-fold domain superfamily	Homologous Superfamily