4QK0 | pdb_00004qk0

Crystal structure of Ara127N-Se, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	GH127 C-terminal domain-like	8051871	3002042	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YicI C-terminal domain-like	8051870	3000267	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Six-hairpin glycosidases	8051869	3000970	SCOP2B (2022-06-29)
C	SCOP2 Family	Beta-L-arabinofuranosidase-like	8050270	4006821	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Six-hairpin glycosidases	8051869	3000970	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	YicI C-terminal domain-like	8051870	3000267	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	GH127 C-terminal domain-like	8051871	3002042	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Six-hairpin glycosidases	8051869	3000970	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GH127 C-terminal domain-like	8051871	3002042	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	YicI C-terminal domain-like	8051870	3000267	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Six-hairpin glycosidases	8051869	3000970	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GH127 C-terminal domain-like	8051871	3002042	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	YicI C-terminal domain-like	8051870	3000267	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	COG3533	e4qk0D3	A: beta barrels	X: Glycoside hydrolase family 127 C-terminal domain (From Topology)	H: Glycoside hydrolase family 127 C-terminal domain (From Topology)	T: Glycoside hydrolase family 127 C-terminal domain	F: COG3533	ECOD (1.6)
D	Glyco_hydro_127_2nd	e4qk0D1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related (From Topology)	T: Glycoside hydrolase family 127 middle domain-related	F: Glyco_hydro_127_2nd	ECOD (1.6)
D	Glyco_hydro_127_1st	e4qk0D2	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_127_1st	ECOD (1.6)
C	COG3533	e4qk0C3	A: beta barrels	X: Glycoside hydrolase family 127 C-terminal domain (From Topology)	H: Glycoside hydrolase family 127 C-terminal domain (From Topology)	T: Glycoside hydrolase family 127 C-terminal domain	F: COG3533	ECOD (1.6)
C	Glyco_hydro_127_2nd	e4qk0C1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related (From Topology)	T: Glycoside hydrolase family 127 middle domain-related	F: Glyco_hydro_127_2nd	ECOD (1.6)
C	Glyco_hydro_127_1st	e4qk0C2	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_127_1st	ECOD (1.6)
B	COG3533	e4qk0B2	A: beta barrels	X: Glycoside hydrolase family 127 C-terminal domain (From Topology)	H: Glycoside hydrolase family 127 C-terminal domain (From Topology)	T: Glycoside hydrolase family 127 C-terminal domain	F: COG3533	ECOD (1.6)
B	Glyco_hydro_127_2nd	e4qk0B3	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related (From Topology)	T: Glycoside hydrolase family 127 middle domain-related	F: Glyco_hydro_127_2nd	ECOD (1.6)
B	Glyco_hydro_127_1st	e4qk0B1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_127_1st	ECOD (1.6)
A	COG3533	e4qk0A1	A: beta barrels	X: Glycoside hydrolase family 127 C-terminal domain (From Topology)	H: Glycoside hydrolase family 127 C-terminal domain (From Topology)	T: Glycoside hydrolase family 127 C-terminal domain	F: COG3533	ECOD (1.6)
A	Glyco_hydro_127_2nd	e4qk0A3	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related (From Topology)	T: Glycoside hydrolase family 127 middle domain-related	F: Glyco_hydro_127_2nd	ECOD (1.6)
A	Glyco_hydro_127_1st	e4qk0A2	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_127_1st	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	GH127 beta-L-arabinofuranoside	-	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR049174	Non-reducing end beta-L-arabinofuranosidase-like	Family
A, B, C, D	IPR049046	Non-reducing end beta-L-arabinofuranosidase-like, GH127 middle domain	Domain
A, B, C, D	IPR008928	Six-hairpin glycosidase superfamily	Homologous Superfamily
A, B, C, D	IPR049049	Non-reducing end beta-L-arabinofuranosidase-like, GH127 C-terminal domain	Domain
A, B, C, D	IPR012878	Non-reducing end beta-L-arabinofuranosidase-like, GH127 catalytic domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.