4PXV | pdb_00004pxv

Crystal Structure of LysM domain from pteris ryukyuensis chitinase A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4pxvd_	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Pteris ryukyuensis ) [TaxId: 367335 ],	SCOPe (2.08)
C	d4pxvc_	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Pteris ryukyuensis ) [TaxId: 367335 ],	SCOPe (2.08)
B	d4pxvb_	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Pteris ryukyuensis ) [TaxId: 367335 ],	SCOPe (2.08)
A	d4pxva_	Alpha and beta proteins (a+b)	LysM domain	LysM domain	automated matches	automated matches	(Pteris ryukyuensis ) [TaxId: 367335 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	LysM domain-like	8076157	3001938	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	LysM domain-like	8076157	3001938	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	LysM domain-like	8076157	3001938	SCOP2B (2022-06-29)
A	SCOP2 Family	LysM domain	8076156	4000905	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	LysM domain-like	8076157	3001938	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	LysM_3	e4pxvD1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: LysM_3	ECOD (1.6)
C	LysM_3	e4pxvC1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: LysM_3	ECOD (1.6)
B	LysM_3	e4pxvB1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: LysM_3	ECOD (1.6)
A	LysM_3	e4pxvA1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: LysM_3	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.10.350.10	Alpha Beta	Roll	Membrane-bound Lytic Murein Transglycosylase D	Chain A	CATH (4.2.0)
C	3.10.350.10	Alpha Beta	Roll	Membrane-bound Lytic Murein Transglycosylase D	Chain A	CATH (4.2.0)
B	3.10.350.10	Alpha Beta	Roll	Membrane-bound Lytic Murein Transglycosylase D	Chain A	CATH (4.2.0)
A	3.10.350.10	Alpha Beta	Roll	Membrane-bound Lytic Murein Transglycosylase D	Chain A	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01476	LysM domain (LysM)	LysM domain	The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation [1]. This domain may have a general peptidoglycan binding function. The structure of this domain is known [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Chitinase A	hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR000677	Chitinase-like	Family
A, B, C, D	IPR036779	LysM domain superfamily	Homologous Superfamily
A, B, C, D	IPR001579	Glycosyl hydrolase family 18, active site	Active Site
A, B, C, D	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B, C, D	IPR018392	LysM domain	Domain
A, B, C, D	IPR001223	Glycoside hydrolase family 18, catalytic domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.