4PC4 | pdb_00004pc4

Bombyx mori lipoprotein 6

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	30K Lipoprotein N-terminal domain-like	8055958	3002325	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	30K Lipoprotein C-terminal domain-like	8055957	3002324	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	30K Lipoprotein C-terminal domain-like	8055957	3002324	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	30K Lipoprotein N-terminal domain-like	8055958	3002325	SCOP2B (2022-06-29)
C	SCOP2 Family	30K Lipoprotein C-terminal domain-like	8051271	4007275	SCOP2 (2022-06-29)
C	SCOP2 Family	30K Lipoprotein N-terminal domain-like	8055956	4007659	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	30K Lipoprotein C-terminal domain-like	8055957	3002324	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	30K Lipoprotein N-terminal domain-like	8055958	3002325	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	30K Lipoprotein N-terminal domain-like	8055958	3002325	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	30K Lipoprotein C-terminal domain-like	8055957	3002324	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	30K Lipoprotein C-terminal domain-like	8055957	3002324	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	30K Lipoprotein N-terminal domain-like	8055958	3002325	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E		e4pc4E1	A: MocoBD/DmpA-related	X: MocoBD/DmpA-related	H: Retrovirus capsid protein-C	T: Ldh_1_C	F:	ECOD (20:10:01)
D		e4pc4D1	A: MocoBD/DmpA-related	X: MocoBD/DmpA-related	H: Retrovirus capsid protein-C	T: Ldh_1_C	F:	ECOD (20:10:01)
C		e4pc4C1	A: beta-propeller-like	X: beta-propeller	H: 7-bladed	T: Peripla_BP_6	F:	ECOD (20:10:01)
B		e4pc4B1	A: MocoBD/DmpA-related	X: MocoBD/DmpA-related	H: Retrovirus capsid protein-C	T: Ldh_1_C	F:	ECOD (20:10:01)
A		e4pc4A1	A: MocoBD/DmpA-related	X: MocoBD/DmpA-related	H: Retrovirus capsid protein-C	T: Ldh_1_C	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
E	1.10.10.2400	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	CATH (4.3.0)
D	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
D	1.10.10.2400	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	CATH (4.3.0)
C	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
C	1.10.10.2400	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	CATH (4.3.0)
B	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
B	1.10.10.2400	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	CATH (4.3.0)
A	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (4.3.0)
A	1.10.10.2400	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF03260	Lepidopteran low molecular weight (30 kD) lipoprotein (Lipoprotein_11)	Lepidopteran low molecular weight (30 kD) lipoprotein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	30K lipoprotein	-	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR004943	Lepidopteran low molecular weight lipoprotein	Family
A, B, C, D, E	IPR042046	Lepidopteran low molecular weight lipoprotein, N-terminal domain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.