4O8Q | pdb_00004o8q

Crystal structure of bovine MHD domain of the COPI delta subunit at 2.15 A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Peptidase_M99_C	e4o8qB1	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Peptidase_M99_C	ECOD (v294.1)
A	HTH_3	e4o8qA1	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: HTH_3	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00928	Adaptor complexes medium subunit family (Adap_comp_sub)	Adaptor complexes medium subunit family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Coatomer subunit delta	-	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum adult locomotory behavior behavior multicellular organismal process adult behavior locomotory behavior Golgi localization localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum adult locomotory behavior behavior multicellular organismal process adult behavior locomotory behavior Golgi localization organelle localization establishment of protein localization protein transport macromolecule localization intracellular protein localization pigmentation developmental process head development cerebellar cortex maturation hindbrain maturation central nervous system maturation cerebellum maturation animal organ development brain development cerebellar Purkinje cell layer maturation nervous system development developmental maturation cerebellar cortex development multicellular organism development cerebellar Purkinje cell layer development cerebellum development central nervous system development anatomical structure maturation metencephalon development anatomical structure development hindbrain development system development cellular localization intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport intercellular transport establishment of localization in cell	membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex endomembrane system COPI-coated vesicle membrane coat intracellular organelle cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex endomembrane system COPI-coated vesicle membrane coat intracellular organelle cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle coated vesicle Golgi-associated vesicle vesicle COPI vesicle coat Golgi apparatus membrane coated membrane intracellular membrane-bounded organelle COPI-coated vesicle membrane coated vesicle membrane cytoplasmic vesicle membrane organelle Golgi-associated vesicle membrane cytoplasm organelle membrane Golgi membrane endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR011012	Longin-like domain superfamily	Homologous Superfamily
A, B	IPR027059	Coatomer delta subunit	Family
A, B	IPR022775	AP complex, mu/sigma subunit	Domain
A, B	IPR036168	AP-2 complex subunit mu, C-terminal superfamily	Homologous Superfamily
A, B	IPR028565	Mu homology domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.