4O2W | pdb_00004o2w

Crystal structure of the third RCC1-like domain of HERC1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Cyclotide	e4o2wD1	A: alpha bundles	X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	F: Cyclotide	ECOD (develop294)
C	Cyclotide	e4o2wC1	A: alpha bundles	X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	F: Cyclotide	ECOD (develop294)
B	Cyclotide	e4o2wB1	A: alpha bundles	X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	F: Cyclotide	ECOD (develop294)
A	Cyclotide	e4o2wA1	A: alpha bundles	X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	F: Cyclotide	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.130.10.30	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
C	2.130.10.30	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
B	2.130.10.30	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
A	2.130.10.30	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF25390	RCC1-like domain (WD40_RLD)	RCC1-like domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	E3 ubiquitin-protein ligase HERC1	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	multicellular organismal process tissue remodeling bone remodeling developmental process corpus callosum development head development forebrain development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development telencephalon development multicellular organismal process tissue remodeling bone remodeling developmental process corpus callosum development head development forebrain development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development telencephalon development system development ossification bone mineralization biomineral tissue development tissue development catabolic process autophagy cellular process metabolic process process utilizing autophagic mechanism primary metabolic process protein ubiquitination macromolecule modification protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal system process nervous system process neuromuscular process neuromuscular process controlling balance biosynthetic process gene expression macromolecule biosynthetic process negative regulation of catabolic process regulation of biological process regulation of cellular process negative regulation of metabolic process biological regulation negative regulation of biological process regulation of catabolic process regulation of autophagy negative regulation of autophagy negative regulation of cellular process regulation of metabolic process plasma membrane bounded cell projection organization cellular developmental process cell projection organization cell development neuron projection development cellular component organization generation of neurons neurogenesis neuron differentiation cell differentiation neuron development cellular component organization or biogenesis cerebellar cortex morphogenesis hindbrain morphogenesis cerebellar Purkinje cell layer formation central nervous system neuron differentiation cerebellar Purkinje cell layer development cerebellar Purkinje cell differentiation metencephalon development cerebellar Purkinje cell layer morphogenesis cerebellar cortex formation cerebellum morphogenesis cerebellar cortex development anatomical structure morphogenesis cerebellum development anatomical structure formation involved in morphogenesis hindbrain development cell differentiation in hindbrain	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle Golgi apparatus organelle intracellular membrane-bounded organelle endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR035768	HERC1, SPRY domain	Domain
A, B, C, D	IPR000408	Regulator of chromosome condensation, RCC1	Repeat
A, B, C, D	IPR019775	WD40 repeat, conserved site	Conserved Site
A, B, C, D	IPR035983	HECT, E3 ligase catalytic domain	Homologous Superfamily
A, B, C, D	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B, C, D	IPR051625	Diverse Signaling and Regulatory Domain-Containing Protein	Family
A, B, C, D	IPR058923	RCC1-like domain	Domain
A, B, C, D	IPR043136	B30.2/SPRY domain superfamily	Homologous Superfamily
A, B, C, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B, C, D	IPR003877	SPRY domain	Domain
A, B, C, D	IPR000569	HECT domain	Domain
A, B, C, D	IPR001870	B30.2/SPRY domain	Domain
A, B, C, D	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B, C, D	IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Homologous Superfamily
A, B, C, D	IPR001680	WD40 repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q15751	macrocephaly, dysmorphic facies, and psychomotor retardation atrial fibrillation intellectual disability endogenous depression osteosarcoma pilocytic astrocytoma attention deficit hyperactivity disorder, inattentive type glioblastoma large cell medulloblastoma malignant ependymoma ovarian cancer subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor hereditary spastic paraplegia lung cancer macrocephaly, dysmorphic facies, and psychomotor retardation atrial fibrillation intellectual disability endogenous depression osteosarcoma pilocytic astrocytoma attention deficit hyperactivity disorder, inattentive type glioblastoma large cell medulloblastoma malignant ependymoma ovarian cancer subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor hereditary spastic paraplegia lung cancer malignant glioma Pick disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.