4NL3
Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth D] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8058965 | 3000419 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8058965 | 3000419 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8058965 | 3000419 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2 Family | Pleiotropic translational regulator Hfq | 8058964 | 4002164 | SCOP2 (2022-06-29) |
D [auth C] | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8058965 | 3000419 | SCOP2 (2022-06-29) |
E | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8058965 | 3000419 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8058965 | 3000419 | SCOP2B (2022-06-29) |
G [auth J] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8058965 | 3000419 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8058965 | 3000419 | SCOP2B (2022-06-29) |
I [auth H] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8058965 | 3000419 | SCOP2B (2022-06-29) |
J [auth I] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8058965 | 3000419 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8058965 | 3000419 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8058965 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | Hfq_1 | e4nl3D1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Hfq_1 | ECOD (1.6) |
B [auth A] | Hfq_1 | e4nl3A1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Hfq_1 | ECOD (1.6) |
C [auth B] | Hfq_1 | e4nl3B1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Hfq_1 | ECOD (1.6) |
D [auth C] | Hfq_1 | e4nl3C1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Hfq_1 | ECOD (1.6) |
E | Hfq_1 | e4nl3E1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Hfq_1 | ECOD (1.6) |
F | Hfq_1 | e4nl3F1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Hfq_1 | ECOD (1.6) |
G [auth J] | Hfq_1 | e4nl3J1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Hfq_1 | ECOD (1.6) |
H [auth G] | Hfq_1 | e4nl3G1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Hfq_1 | ECOD (1.6) |
I [auth H] | Hfq_1 | e4nl3H1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Hfq_1 | ECOD (1.6) |
J [auth I] | Hfq_1 | e4nl3I1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Hfq_1 | ECOD (1.6) |
K | Hfq_1 | e4nl3K1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Hfq_1 | ECOD (1.6) |
L | Hfq_1 | e4nl3L1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Hfq_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth D] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
B [auth A] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
C [auth B] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
D [auth C] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
E | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
F | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
G [auth J] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
H [auth G] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
I [auth H] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
J [auth I] | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
K | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
L | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17209 | Hfq protein (Hfq) | Hfq protein | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010920 | LSM domain superfamily | Homologous Superfamily | |
IPR005001 | RNA-binding protein Hfq | Family | |
IPR047575 | Sm domain | Domain |