Skip to main content

 4NDK | pdb_00004ndk

Crystal structure of a computational designed engrailed homeodomain variant fused with YFP

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2 FamilyFluorescent proteins 8081020 4001049 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyGFP-like 8081021 3000576 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyGFP-like 8096046 3000576 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGFP-like 8096046 3000576 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BH_PPasee4ndkB1 A: alpha arraysX: jelly-rollH: Double-stranded beta-helixT: Double-stranded beta-helixF: H_PPaseECOD (v295.2)
AH_PPasee4ndkA1 A: alpha arraysX: jelly-rollH: Double-stranded beta-helixT: Double-stranded beta-helixF: H_PPaseECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.40.155.10 Mainly Beta Beta Barrel Green Fluorescent Protein Green fluorescent proteinCATH (utative)
A2.40.155.10 Mainly Beta Beta Barrel Green Fluorescent Protein Green fluorescent proteinCATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
E23P-YFP, GFP-like fluorescent chromoprotein FP506, related, chimeric construct,- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR000786Green fluorescent protein, GFPFamily
A, B
IPR011584Green fluorescent protein-relatedFamily
A, B
IPR009017Green fluorescent proteinHomologous Superfamily