4MX8 | pdb_00004mx8

Crystal Structure of TroA-like Periplasmic Binding Protein Peripla_BP_2 from Xylanimonas cellulosilytica

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Helical backbone metal receptor	8084596	3001679	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Helical backbone metal receptor	8084596	3001679	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Helical backbone metal receptor	8084596	3001679	SCOP2B (2022-06-29)
C	SCOP2 Family	TM0189-like	8084595	4003293	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Helical backbone metal receptor	8084596	3001679	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Helical backbone metal receptor	8084596	3001679	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Helical backbone metal receptor	8084596	3001679	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	ZnuA	e4mx8F1	A: alpha bundles	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: ZnuA	ECOD (develop294)
E	ZnuA	e4mx8E1	A: alpha bundles	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: ZnuA	ECOD (develop294)
D	ZnuA	e4mx8D1	A: alpha bundles	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: ZnuA	ECOD (develop294)
C	ZnuA	e4mx8C1	A: alpha bundles	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: ZnuA	ECOD (develop294)
B	ZnuA	e4mx8B1	A: alpha bundles	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: ZnuA	ECOD (develop294)
A	ZnuA	e4mx8A1	A: alpha bundles	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: ZnuA	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.50.1980	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Nitrogenase molybdenum iron protein domain	CATH (4.3.0)
E	3.40.50.1980	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Nitrogenase molybdenum iron protein domain	CATH (4.3.0)
D	3.40.50.1980	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Nitrogenase molybdenum iron protein domain	CATH (4.3.0)
C	3.40.50.1980	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Nitrogenase molybdenum iron protein domain	CATH (4.3.0)
B	3.40.50.1980	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Nitrogenase molybdenum iron protein domain	CATH (4.3.0)
A	3.40.50.1980	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Nitrogenase molybdenum iron protein domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01497	Periplasmic binding protein (Peripla_BP_2)	Periplasmic binding protein	This is sensor domain found in bacterial periplasmic binding proteins, several of which are involved in iron and cobalamin transport [1,2,3]. Among its ligands are siderophores bacillibactin, enterobactin and iron(III)-hydroxamates (Matilla et. al., ...	This is sensor domain found in bacterial periplasmic binding proteins, several of which are involved in iron and cobalamin transport [1,2,3]. Among its ligands are siderophores bacillibactin, enterobactin and iron(III)-hydroxamates (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1 https://doi.org/10.1093/femsre/fuab043).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Periplasmic binding protein	-	localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport iron coordination entity transport	cellular anatomical structure outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR051313	Bacterial iron-siderophore binding	Family
A, B, C, D, E A, B, C, D, E, F	IPR002491	ABC transporter periplasmic binding domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR033870	FatB domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.