4MEJ
Crystal structure of Lactobacillus helveticus purine deoxyribosyl transferase (PDT) with the tricyclic purine 8,9-dihydro-9-oxoimidazo[2,1-b]purine (N2,3-ethenoguanine)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4meja_ | Alpha and beta proteins (a/b) | Flavodoxin-like | N-(deoxy)ribosyltransferase-like | N-deoxyribosyltransferase | Purine transdeoxyribosylase | (Lactobacillus helveticus H10 ) [TaxId: 767462 ], | SCOPe (2.08) |
B | d4mejb_ | Alpha and beta proteins (a/b) | Flavodoxin-like | N-(deoxy)ribosyltransferase-like | N-deoxyribosyltransferase | Purine transdeoxyribosylase | (Lactobacillus helveticus H10 ) [TaxId: 767462 ], | SCOPe (2.08) |
C | d4mejc_ | Alpha and beta proteins (a/b) | Flavodoxin-like | N-(deoxy)ribosyltransferase-like | N-deoxyribosyltransferase | Purine transdeoxyribosylase | (Lactobacillus helveticus H10 ) [TaxId: 767462 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF05014 | e4mejA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: N-deoxyribosyltransferase (From Topology) | T: N-deoxyribosyltransferase | F: PF05014 | ECOD (1.6) |
B | PF05014 | e4mejB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: N-deoxyribosyltransferase (From Topology) | T: N-deoxyribosyltransferase | F: PF05014 | ECOD (1.6) |
C | PF05014 | e4mejC1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: N-deoxyribosyltransferase (From Topology) | T: N-deoxyribosyltransferase | F: PF05014 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.450 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
B | 3.40.50.450 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
C | 3.40.50.450 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05014 | Nucleoside 2-deoxyribosyltransferase (Nuc_deoxyrib_tr) | Nucleoside 2-deoxyribosyltransferase | Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyses the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Nucleoside deoxyribosyltransferase | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007710 | Nucleoside 2-deoxyribosyltransferase | Family |