Annotations: 4LLF

Crystal structure of Cucumber Necrosis Virus

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
O [auth P]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
O [auth P]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
N [auth O]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
N [auth O]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
M [auth N]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
M [auth N]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
L [auth M]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
L [auth M]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
K [auth L]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
K [auth L]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
J [auth K]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
J [auth K]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
I [auth J]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
I [auth J]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
H [auth I]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
H [auth I]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2B (2022-06-29)
A	SCOP2 Family	Tombusviridae-like VP	8076882	4003478	SCOP2 (2022-06-29)
A	SCOP2 Family	CNV-CP protruding P-domain-like	8089979	4007693	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8076883	3000918	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CNV-CP protruding P-domain-like	8089980	3002408	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O [auth P]		e4llfP1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
N [auth O]		e4llfO1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
M [auth N]		e4llfN1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
L [auth M]		e4llfM1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
K [auth L]		e4llfL1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
J [auth K]		e4llfK1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
I [auth J]		e4llfJ1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
H [auth I]		e4llfI1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
G [auth H]		e4llfH1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
F [auth G]		e4llfG1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
E [auth F]		e4llfF1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
D [auth E]		e4llfE1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
C [auth D]		e4llfD1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
B		e4llfB1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)
A	Viral_coat	e4llfA1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Viral_coat	ECOD (v295.2)
A		e4llfA2	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F:	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
O [auth P]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
O [auth P]	2.60.40.4030	Mainly Beta	Sandwich	Immunoglobulin-like	CATH (4.3.0)
N [auth O]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
M [auth N]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
L [auth M]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
L [auth M]	2.60.40.4030	Mainly Beta	Sandwich	Immunoglobulin-like	CATH (4.3.0)
K [auth L]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
J [auth K]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
I [auth J]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
I [auth J]	2.60.40.4030	Mainly Beta	Sandwich	Immunoglobulin-like	CATH (4.3.0)
H [auth I]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
G [auth H]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
F [auth G]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
F [auth G]	2.60.40.4030	Mainly Beta	Sandwich	Immunoglobulin-like	CATH (4.3.0)
E [auth F]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
D [auth E]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
C [auth D]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
C [auth D]	2.60.40.4030	Mainly Beta	Sandwich	Immunoglobulin-like	CATH (4.3.0)
B	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)
A	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth D], D [auth E], E [auth F], A, B, C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], L [auth M], M [auth N], N [auth O], O [auth P]	Capsid protein	structural molecule activity RNA binding binding nucleic acid binding	-	viral capsid T=3 icosahedral viral capsid icosahedral viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth D], D [auth E], E [auth F], A, B, C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], L [auth M], M [auth N], N [auth O], O [auth P]	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C [auth D], D [auth E], E [auth F], A, B, C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], L [auth M], M [auth N], N [auth O], O [auth P]	IPR000937	Icosahedral viral capsid protein, S domain	Domain