4LLF | pdb_00004llf

Crystal structure of Cucumber Necrosis Virus

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
O [auth P]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2B (2022-06-29)
ASCOP2 FamilyTombusviridae-like VP 8076882 4003478 SCOP2 (2022-06-29)
ASCOP2 FamilyCNV-CP protruding P-domain-like 8089979 4007693 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPositive stranded ssRNA viruses-like 8076883 3000918 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyCNV-CP protruding P-domain-like 8089980 3002408 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth P]ATP-synt_VA_Ce4llfP1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
N [auth O]ATP-synt_VA_Ce4llfO1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
M [auth N]ATP-synt_VA_Ce4llfN1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
L [auth M]ATP-synt_VA_Ce4llfM1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
K [auth L]ATP-synt_VA_Ce4llfL1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
J [auth K]ATP-synt_VA_Ce4llfK1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
I [auth J]ATP-synt_VA_Ce4llfJ1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
H [auth I]ATP-synt_VA_Ce4llfI1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
G [auth H]ATP-synt_VA_Ce4llfH1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
F [auth G]ATP-synt_VA_Ce4llfG1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
E [auth F]ATP-synt_VA_Ce4llfF1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
D [auth E]ATP-synt_VA_Ce4llfE1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
C [auth D]ATP-synt_VA_Ce4llfD2 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
BATP-synt_VA_Ce4llfB1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)
AViral_coate4llfA1 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Viral_coatECOD (v294.1)
AATP-synt_VA_Ce4llfA2 A: a/b three-layered sandwichesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: ATP-synt_VA_CECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
O [auth P]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
O [auth P]2.60.40.4030 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
N [auth O]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
M [auth N]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
L [auth M]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
L [auth M]2.60.40.4030 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
K [auth L]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
J [auth K]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
I [auth J]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
I [auth J]2.60.40.4030 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
H [auth I]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
G [auth H]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
F [auth G]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
F [auth G]2.60.40.4030 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
E [auth F]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D [auth E]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C [auth D]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C [auth D]2.60.40.4030 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
B2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
A2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR029053Viral coat protein subunitHomologous Superfamily
IPR000937Icosahedral viral capsid protein, S domainDomain