4L3G

Crystal Structure of the E113Q-MauG/pre-Methylamine Dehydrogenase Complex Aged 120 Days

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d4l3gc_	Small proteins	Methylamine dehydrogenase, L chain	Methylamine dehydrogenase, L chain	Methylamine dehydrogenase, L chain	automated matches	(Paracoccus denitrificans PD1222 ) [TaxId: 318586 ],	SCOPe (2.08)
E	d4l3ge_	Small proteins	Methylamine dehydrogenase, L chain	Methylamine dehydrogenase, L chain	Methylamine dehydrogenase, L chain	automated matches	(Paracoccus denitrificans PD1222 ) [TaxId: 318586 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	F_UNCLASSIFIED	e4l3gA2	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: F_UNCLASSIFIED	ECOD (1.6)
A	PF03150	e4l3gA1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF03150	ECOD (1.6)
B	F_UNCLASSIFIED	e4l3gB2	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: F_UNCLASSIFIED	ECOD (1.6)
B	PF03150	e4l3gB1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF03150	ECOD (1.6)
C	PF02975	e4l3gC1	A: few secondary structure elements	X: Methylamine dehydrogenase, L chain (From Topology)	H: Methylamine dehydrogenase, L chain (From Topology)	T: Methylamine dehydrogenase, L chain	F: PF02975	ECOD (1.6)
E	PF02975	e4l3gE1	A: few secondary structure elements	X: Methylamine dehydrogenase, L chain (From Topology)	H: Methylamine dehydrogenase, L chain (From Topology)	T: Methylamine dehydrogenase, L chain	F: PF02975	ECOD (1.6)
D	PF06433	e4l3gD1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF06433	ECOD (1.6)
F	PF06433	e4l3gF1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF06433	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
B	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
C	2.60.30.10	Mainly Beta	Sandwich	Electron Transport Ethylamine Dehydrogenase	Methylamine/Aralkylamine dehydrogenase light chain	CATH (4.3.0)
E	2.60.30.10	Mainly Beta	Sandwich	Electron Transport Ethylamine Dehydrogenase	Methylamine/Aralkylamine dehydrogenase light chain	CATH (4.3.0)
D	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
F	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03150	Di-haem cytochrome c peroxidase (CCP_MauG)	Di-haem cytochrome c peroxidase	-	Family
C, E	PF02975	Methylamine dehydrogenase, L chain (Me-amine-dh_L)	Methylamine dehydrogenase, L chain	-	Domain
D, F	PF06433	Methylamine dehydrogenase heavy chain (MADH) (Me-amine-dh_H)	Methylamine dehydrogenase heavy chain (MADH)	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Methylamine utilization protein MauG	binding organic cyclic compound binding tetrapyrrole binding heme binding electron transfer activity cation binding ion binding metal ion binding small molecule binding	-	periplasmic space cellular anatomical entity
C, E	methylamine dehydrogenase light chain	oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity methylamine dehydrogenase (amicyanin) activity oxidoreductase activity, acting on the CH-NH2 group of donors, with a copper protein as acceptor catalytic activity amine dehydrogenase activity	amine metabolic process organonitrogen compound metabolic process organic substance metabolic process metabolic process	outer membrane-bounded periplasmic space cell envelope periplasmic space cellular anatomical entity
D, F	methylamine dehydrogenase heavy chain	oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity methylamine dehydrogenase (amicyanin) activity oxidoreductase activity, acting on the CH-NH2 group of donors, with a copper protein as acceptor catalytic activity amine dehydrogenase activity	amine metabolic process methylamine metabolic process organonitrogen compound metabolic process organic substance metabolic process metabolic process primary amino compound metabolic process	periplasmic space cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR004852	Di-haem cytochrome c peroxidase	Domain
A, B	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
A, B	IPR026259	Di-c-type haem protein, MauG/cytochrome c peroxidase	Family
A, B	IPR009056	Cytochrome c-like domain	Domain
C, E	IPR004229	Methylamine dehydrogenase light chain	Family
C, E	IPR016008	Amine dehydrogenase light chain	Family
C, E	IPR036560	Methylamine/Aralkylamine dehydrogenase light chain superfamily	Homologous Superfamily
C, E	IPR013504	Methylamine/Aralkylamine dehydrogenase light chain, C-terminal domain	Domain
D, F	IPR009451	Amine dehydrogenase heavy chain	Family
D, F	IPR011044	Quinoprotein amine dehydrogenase, beta chain-like	Homologous Superfamily
D, F	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
D, F	IPR013476	Methylamine dehydrogenase heavy chain	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B	HYP	Parent Component: PRO RESID: AA0030 PSI-MOD : 4-hydroxy-L-proline MOD:00039
C, E	TRQ	Parent Component: TRP RESID: AA0030 , AA0148 PSI-MOD : 4-hydroxy-L-proline MOD:00039 , oxidation of tryptophan to L-tryptophyl quinone MOD:00157

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.