4JNX | pdb_00004jnx

Crystal structure of RNA silencing suppressor p19 complexed with double-helical RNA 20mer pG(CUG)6C

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B [auth D]	d4jnxd1	Alpha and beta proteins (a+b)	Tombusvirus P19 core protein, VP19	Tombusvirus P19 core protein, VP19	Tombusvirus P19 core protein, VP19	automated matches	TBSV (Tomato bushy stunt virus ) [TaxId: 12145 ],	SCOPe (2.08)
B [auth D]	d4jnxd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	TBSV (Tomato bushy stunt virus ) [TaxId: 12145 ],	SCOPe (2.08)
A	d4jnxa1	Alpha and beta proteins (a+b)	Tombusvirus P19 core protein, VP19	Tombusvirus P19 core protein, VP19	Tombusvirus P19 core protein, VP19	automated matches	TBSV (Tomato bushy stunt virus ) [TaxId: 12145 ],	SCOPe (2.08)
A	d4jnxa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	TBSV (Tomato bushy stunt virus ) [TaxId: 12145 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth D]	Tombus_P19	e4jnxD1	A: a+b two layers	X: Tombusvirus P19 core protein, VP19 (From Topology)	H: Tombusvirus P19 core protein, VP19 (From Topology)	T: Tombusvirus P19 core protein, VP19	F: Tombus_P19	ECOD (1.6)
A	Tombus_P19	e4jnxA1	A: a+b two layers	X: Tombusvirus P19 core protein, VP19 (From Topology)	H: Tombusvirus P19 core protein, VP19 (From Topology)	T: Tombusvirus P19 core protein, VP19	F: Tombus_P19	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth D]	3.30.390.180	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.2.0)
A	3.30.390.180	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth D]	PF03220	Tombusvirus P19 core protein (Tombus_P19)	Tombusvirus P19 core protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth B], D [auth G]	5'-R(PGPCPUPGPCPUPGPCPUPGPCPUPGPCPUPGPCPUPGPC)-3'	-	-	-
A, B [auth D]	RNA silencing suppressor p19	RNA binding binding nucleic acid binding	symbiont-mediated perturbation of host defense response symbiont-mediated suppression of host immune response biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth D]	IPR036131	Tombusvirus P19 superfamily	Homologous Superfamily
A, B [auth D]	IPR004905	Tombusvirus p19 core protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.