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Complex of Porphyromonas gingivalis RgpB pro- and mature domains External Resource: Annotation Chains Domain Info Class Fold Superfamily Family Domain Species Provenance Source (Version) H d4iefh2 All beta proteins Immunoglobulin-like beta-sandwich E set domains automated matches automated matches Porphyromonas gingivalis W83 ) [TaxId: 242619 ], SCOPe (2.08) H d4iefh1 Alpha and beta proteins (a/b) Caspase-like Caspase-like Gingipain R (RgpB), N-terminal domain automated matches Porphyromonas gingivalis W83 ) [TaxId: 242619 ], SCOPe (2.08) H d4iefh3 Artifacts Tags Tags Tags C-terminal Tags Porphyromonas gingivalis W83 ) [TaxId: 242619 ], SCOPe (2.08) F d4ieff2 All beta proteins Immunoglobulin-like beta-sandwich E set domains automated matches automated matches Porphyromonas gingivalis W83 ) [TaxId: 242619 ], SCOPe (2.08) F d4ieff1 Alpha and beta proteins (a/b) Caspase-like Caspase-like Gingipain R (RgpB), N-terminal domain automated matches Porphyromonas gingivalis W83 ) [TaxId: 242619 ], SCOPe (2.08) F d4ieff3 Artifacts Tags Tags Tags C-terminal Tags Porphyromonas gingivalis W83 ) [TaxId: 242619 ], SCOPe (2.08) D d4iefd2 All beta proteins Immunoglobulin-like beta-sandwich E set domains automated matches automated matches Porphyromonas gingivalis W83 ) [TaxId: 242619 ], SCOPe (2.08) D d4iefd1 Alpha and beta proteins (a/b) Caspase-like Caspase-like Gingipain R (RgpB), N-terminal domain automated matches Porphyromonas gingivalis W83 ) [TaxId: 242619 ], SCOPe (2.08) D d4iefd3 Artifacts Tags Tags Tags C-terminal Tags Porphyromonas gingivalis W83 ) [TaxId: 242619 ], SCOPe (2.08) B d4iefb2 All beta proteins Immunoglobulin-like beta-sandwich E set domains automated matches automated matches Porphyromonas gingivalis W83 ) [TaxId: 242619 ], SCOPe (2.08) B d4iefb1 Alpha and beta proteins (a/b) Caspase-like Caspase-like Gingipain R (RgpB), N-terminal domain automated matches Porphyromonas gingivalis W83 ) [TaxId: 242619 ], SCOPe (2.08) B d4iefb3 Artifacts Tags Tags Tags C-terminal Tags Porphyromonas gingivalis W83 ) [TaxId: 242619 ], SCOPe (2.08)
Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) H SCOP2B Superfamily Caspase-like 8044003 3001096 SCOP2B (2022-06-29) H SCOP2B Superfamily E set domains 8055053 3000070 SCOP2B (2022-06-29) F SCOP2B Superfamily Caspase-like 8044003 3001096 SCOP2B (2022-06-29) F SCOP2B Superfamily E set domains 8055053 3000070 SCOP2B (2022-06-29) D SCOP2B Superfamily E set domains 8055053 3000070 SCOP2B (2022-06-29) D SCOP2B Superfamily Caspase-like 8044003 3001096 SCOP2B (2022-06-29) B SCOP2B Superfamily Caspase-like 8044003 3001096 SCOP2B (2022-06-29) B SCOP2B Superfamily E set domains 8055053 3000070 SCOP2B (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) H Clenterotox e4iefH1 A: alpha arrays X: beta-Grasp H: Ubiquitin-related T: Ubiquitin-like F: Clenterotox ECOD (v295.2) H Med26 e4iefH2 A: alpha arrays X: PBZ domain H: PBZ domain T: PBZ domain F: Med26 ECOD (v295.2) F Clenterotox e4iefF1 A: alpha arrays X: beta-Grasp H: Ubiquitin-related T: Ubiquitin-like F: Clenterotox ECOD (v295.2) F MPI_cupin_dom e4iefF2 A: alpha arrays X: jelly-roll H: Double-stranded beta-helix T: Double-stranded beta-helix F: MPI_cupin_dom ECOD (v295.2) D HSP90,HATPase_c_3 e4iefD1 A: alpha arrays X: Rossmann-like H: Rossmann-related T: NagB/RpiA/CoA transferase-like F: HSP90,HATPase_c_3 ECOD (v295.2) D Med26 e4iefD2 A: alpha arrays X: PBZ domain H: PBZ domain T: PBZ domain F: Med26 ECOD (v295.2) B Clenterotox e4iefB1 A: alpha arrays X: beta-Grasp H: Ubiquitin-related T: Ubiquitin-like F: Clenterotox ECOD (v295.2) B Med26 e4iefB2 A: alpha arrays X: PBZ domain H: PBZ domain T: PBZ domain F: Med26 ECOD (v295.2) G FtsJ e4iefG1 A: alpha arrays X: beta-Grasp H: Ubiquitin-related T: Ubiquitin-like F: FtsJ ECOD (v295.2) E FtsJ e4iefE1 A: alpha arrays X: beta-Grasp H: Ubiquitin-related T: Ubiquitin-like F: FtsJ ECOD (v295.2) C Bunya_nucleocap e4iefC1 A: alpha arrays X: Leanyer virus nucleoprotein-related H: Leanyer virus nucleoprotein-related T: Leanyer virus nucleoprotein-related F: Bunya_nucleocap ECOD (v295.2) A FtsJ e4iefA1 A: alpha arrays X: beta-Grasp H: Ubiquitin-related T: Ubiquitin-like F: FtsJ ECOD (v295.2)
Chains Polymer Molecular Function Biological Process Cellular Component Gingipain R2 Mature Domain Gingipain R2 Pro-Domain
Chains Accession Name Type IPR029030 Caspase-like domain superfamily Homologous Superfamily IPR039392 Gingipain, N-terminal Domain IPR005536 Peptidase C25, Ig-like domain Domain IPR012600 Gingipain propeptide Domain IPR038490 Gingipain propeptide superfamily Homologous Superfamily IPR026444 Secretion system, C-terminal sorting domain Domain IPR041333 Peptidase M60, C-terminal Domain IPR001769 Gingipain Domain IPR029031 Gingipain, N-terminal superfamily Homologous Superfamily IPR013783 Immunoglobulin-like fold Homologous Superfamily IPR014756 Immunoglobulin E-set Homologous Superfamily IPR029030 Caspase-like domain superfamily Homologous Superfamily IPR039392 Gingipain, N-terminal Domain IPR005536 Peptidase C25, Ig-like domain Domain IPR012600 Gingipain propeptide Domain IPR038490 Gingipain propeptide superfamily Homologous Superfamily IPR026444 Secretion system, C-terminal sorting domain Domain IPR041333 Peptidase M60, C-terminal Domain IPR001769 Gingipain Domain IPR029031 Gingipain, N-terminal superfamily Homologous Superfamily IPR013783 Immunoglobulin-like fold Homologous Superfamily IPR014756 Immunoglobulin E-set Homologous Superfamily
Protein Modification Annotation Modified Residue(s) Chain Residue(s) Description CSD Parent Component: CYS RESID AA0262 PSI-MOD MOD:00267