4ICU | pdb_00004icu

Ubiquitin-like domain of human tubulin folding cofactor E - crystal from A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4icud_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	Ubiquitin-related	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d4icuc_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	Ubiquitin-related	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4icub_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	Ubiquitin-related	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d4icua_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	Ubiquitin-related	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Ubiquitin-like	8087168	3000157	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ubiquitin-like	8087168	3000157	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ubiquitin-like	8087168	3000157	SCOP2B (2022-06-29)
A	SCOP2 Family	Ubiquitin-related	8087167	4000962	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ubiquitin-like	8087168	3000157	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Bact_lectin	e4icuD1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: Bact_lectin	ECOD (v294.1)
C	Bact_lectin	e4icuC1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: Bact_lectin	ECOD (v294.1)
B	Bact_lectin	e4icuB1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: Bact_lectin	ECOD (v294.1)
A	Ribosomal_S21	e4icuA1	A: a/b three-layered sandwiches	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: Ribosomal_S21	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
C	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
B	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF14560	Ubiquitin-like domain (Ubiquitin_2)	Ubiquitin-like domain	This entry contains ubiquitin-like domains [1-2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Tubulin-specific chaperone E	cytoskeletal protein binding protein binding binding tubulin binding alpha-tubulin binding protein-folding chaperone binding	multicellular organismal process axonogenesis cellular developmental process cell projection organization peripheral nervous system neuron development plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis multicellular organismal process axonogenesis cellular developmental process cell projection organization peripheral nervous system neuron development plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development cellular component organization or biogenesis system development developmental process plasma membrane bounded cell projection organization peripheral nervous system development nervous system development axon development cell morphogenesis involved in neuron differentiation peripheral nervous system neuron differentiation generation of neurons peripheral nervous system neuron axonogenesis anatomical structure morphogenesis neuron development cellular process adult locomotory behavior behavior adult behavior locomotory behavior protein folding biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation tubulin complex assembly cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly organelle organization microtubule cytoskeleton organization microtubule-based process cytoskeleton organization mitotic cell cycle mitotic spindle organization mitotic cell cycle process cell cycle microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process muscle atrophy system process muscle adaptation response to stimulus muscle system process post-chaperonin tubulin folding pathway developmental growth growth post-embryonic development	cellular anatomical structure intracellular anatomical structure cytoplasm polymeric cytoskeletal fiber intracellular membraneless organelle intracellular organelle cytoskeleton organelle membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036859	CAP Gly-rich domain superfamily	Homologous Superfamily
A, B, C, D	IPR000626	Ubiquitin-like domain	Domain
A, B, C, D	IPR000938	CAP Gly-rich domain	Domain
A, B, C, D	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, B, C, D	IPR044079	TBCE, ubiquitin-like (Ubl) domain	Domain
A, B, C, D	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q15813	hypoparathyroidism-retardation-dysmorphism syndrome autosomal recessive Kenny-Caffey syndrome encephalopathy, progressive, with amyotrophy and optic atrophy intellectual disability bacterial infectious disease Facies osteosclerosis Kenny-Caffey syndrome medulloblastoma osteosarcoma psoriasis invasive ductal breast carcinoma large cell medulloblastoma neurodegenerative disease lung cancer hypoparathyroidism-retardation-dysmorphism syndrome autosomal recessive Kenny-Caffey syndrome encephalopathy, progressive, with amyotrophy and optic atrophy intellectual disability bacterial infectious disease Facies osteosclerosis Kenny-Caffey syndrome medulloblastoma osteosarcoma psoriasis invasive ductal breast carcinoma large cell medulloblastoma neurodegenerative disease lung cancer osteogenesis imperfecta ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.