Annotations: 4GXH

Crystal Structure of a Pyrrolidone-carboxylate peptidase 1 (target ID NYSGRC-012831) from Xenorhabdus bovienii SS-2004

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4gxha_	Alpha and beta proteins (a/b)	Phosphorylase/hydrolase-like	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	automated matches	automated matches	(Xenorhabdus bovienii SS-2004 ) [TaxId: 406818 ],	SCOPe (2.08)
B	d4gxhb_	Alpha and beta proteins (a/b)	Phosphorylase/hydrolase-like	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	automated matches	automated matches	(Xenorhabdus bovienii SS-2004 ) [TaxId: 406818 ],	SCOPe (2.08)
C	d4gxhc_	Alpha and beta proteins (a/b)	Phosphorylase/hydrolase-like	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	automated matches	automated matches	(Xenorhabdus bovienii SS-2004 ) [TaxId: 406818 ],	SCOPe (2.08)
D	d4gxhd_	Alpha and beta proteins (a/b)	Phosphorylase/hydrolase-like	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	automated matches	automated matches	(Xenorhabdus bovienii SS-2004 ) [TaxId: 406818 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	8061833	3000655	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	8061833	3000655	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	8061833	3000655	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	8061833	3000655	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Avidin	e4gxhA1	A: alpha arrays	X: GIY-YIG endonuclease	H: GIY-YIG endonuclease	T: GIY-YIG endonuclease	F: Avidin	ECOD (v295.2)
B	V-set	e4gxhB1	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: V-set	ECOD (v295.2)
C	V-set	e4gxhC1	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: V-set	ECOD (v295.2)
D	V-set	e4gxhD1	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: V-set	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.630.20	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Peptidase C15, pyroglutamyl peptidase I-like	CATH (4.3.0)
B	3.40.630.20	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Peptidase C15, pyroglutamyl peptidase I-like	CATH (4.3.0)
C	3.40.630.20	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Peptidase C15, pyroglutamyl peptidase I-like	CATH (4.3.0)
D	3.40.630.20	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Peptidase C15, pyroglutamyl peptidase I-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Pyrrolidone-carboxylate peptidase	cysteine-type peptidase activity peptidase activity pyroglutamyl-peptidase activity omega peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR033694	Pyroglutamyl peptidase I, Cys active site	Active Site
A, B, C, D	IPR029762	Pyroglutamyl peptidase I, bacterial-type	Family
A, B, C, D	IPR036440	Peptidase C15, pyroglutamyl peptidase I-like superfamily	Homologous Superfamily
A, B, C, D	IPR000816	Peptidase C15, pyroglutamyl peptidase I	Family
A, B, C, D	IPR033693	Pyroglutamyl peptidase I, Glu active site	Active Site
A, B, C, D	IPR016125	Peptidase C15, pyroglutamyl peptidase I-like	Family

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